FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3160, 380 aa
  1>>>pF1KE3160 380 - 380 aa - 380 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4941+/-0.000868; mu= 15.6263+/- 0.052
 mean_var=68.1332+/-13.559, 0's: 0 Z-trim(106.0): 17  B-trim: 0 in 0/50
 Lambda= 0.155380
 statistics sampled from 8738 (8742) to 8738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.269), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS2826.1 NPRL2 gene_id:10641|Hs108|chr3          ( 380) 2548 580.2  1e-165


>>CCDS2826.1 NPRL2 gene_id:10641|Hs108|chr3               (380 aa)
 initn: 2548 init1: 2548 opt: 2548  Z-score: 3088.7  bits: 580.2 E(32554): 1e-165
Smith-Waterman score: 2548; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KE3 MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 EKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 HPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEICCKTGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 HPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEICCKTGM
              310       320       330       340       350       360

              370       380
pF1KE3 SYHELDERLENDPNIIICWK
       ::::::::::::::::::::
CCDS28 SYHELDERLENDPNIIICWK
              370       380




380 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:47:01 2016 done: Sun Nov  6 17:47:02 2016
 Total Scan time:  2.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]