FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3152, 364 aa
  1>>>pF1KE3152 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0634+/-0.000759; mu= 14.4481+/- 0.046
 mean_var=102.2593+/-20.730, 0's: 0 Z-trim(111.5): 15  B-trim: 0 in 0/53
 Lambda= 0.126830
 statistics sampled from 12427 (12437) to 12427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.382), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS34417.1 STK19 gene_id:8859|Hs108|chr6          ( 364) 2485 464.7 5.4e-131
CCDS4733.1 STK19 gene_id:8859|Hs108|chr6           ( 368) 2467 461.5 5.3e-130


>>CCDS34417.1 STK19 gene_id:8859|Hs108|chr6               (364 aa)
 initn: 2485 init1: 2485 opt: 2485  Z-score: 2465.3  bits: 464.7 E(32554): 5.4e-131
Smith-Waterman score: 2485; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KE3 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVLKACDGRPYAGAVQKFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVLKACDGRPYAGAVQKFLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIKYFVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIKYFVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 GRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSGTLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSGTLLR
              310       320       330       340       350       360

           
pF1KE3 LPET
       ::::
CCDS34 LPET
           

>>CCDS4733.1 STK19 gene_id:8859|Hs108|chr6                (368 aa)
 initn: 1549 init1: 1549 opt: 2467  Z-score: 2447.4  bits: 461.5 E(32554): 5.3e-130
Smith-Waterman score: 2467; 98.9% identity (98.9% similar) in 368 aa overlap (1-364:1-368)

               10        20        30        40        50        60
pF1KE3 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
              130       140       150       160       170       180

              190       200       210       220           230      
pF1KE3 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRV----LKACDGRPYAGAVQ
       ::::::::::::::::::::::::::::::::::::::::::    ::::::::::::::
CCDS47 DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVCDCVLKACDGRPYAGAVQ
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KE3 KFLASVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KFLASVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIK
              250       260       270       280       290       300

        300       310       320       330       340       350      
pF1KE3 YFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSG
              310       320       330       340       350       360

        360    
pF1KE3 TLLRLPET
       ::::::::
CCDS47 TLLRLPET
               




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:51:26 2016 done: Sun Nov  6 16:51:26 2016
 Total Scan time:  2.650 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]