FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3151, 367 aa
  1>>>pF1KE3151 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2572+/-0.00094; mu= -7.4557+/- 0.057
 mean_var=396.7989+/-79.696, 0's: 0 Z-trim(117.6): 5  B-trim: 0 in 0/55
 Lambda= 0.064386
 statistics sampled from 18408 (18411) to 18408 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.566), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS2427.1 CDK5R2 gene_id:8941|Hs108|chr2          ( 367) 2534 248.6 6.4e-66
CCDS11273.1 CDK5R1 gene_id:8851|Hs108|chr17        ( 307)  820 89.3 4.8e-18


>>CCDS2427.1 CDK5R2 gene_id:8941|Hs108|chr2               (367 aa)
 initn: 2534 init1: 2534 opt: 2534  Z-score: 1296.9  bits: 248.6 E(32554): 6.4e-66
Smith-Waterman score: 2534; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KE3 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH
              310       320       330       340       350       360

              
pF1KE3 WTMNLDR
       :::::::
CCDS24 WTMNLDR
              

>>CCDS11273.1 CDK5R1 gene_id:8851|Hs108|chr17             (307 aa)
 initn: 959 init1: 419 opt: 820  Z-score: 437.5  bits: 89.3 E(32554): 4.8e-18
Smith-Waterman score: 956; 52.7% identity (73.2% similar) in 328 aa overlap (1-328:1-292)

               10        20        30        40        50        60
pF1KE3 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL
       :::::::::.      : . : :.       :  ..: : :   .:..: .. ::: :. 
CCDS11 MGTVLSLSPS-----YRKATLFED-------GAATVGHYTAVQNSKNAK-DKNLKRHSI-
               10                    20        30         40       

               70        80        90       100       110       120
pF1KE3 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP
       ::.: :::.::.:::::. ::::  .: :.  .  . . : ::: .:. .  . .  :.:
CCDS11 ISVLPWKRIVAVSAKKKN-SKKV--QPNSSYQNN-ITHLNNENL-KKSLSCANLSTFAQP
         50        60           70         80         90       100 

              130       140       150       160       170       180
pF1KE3 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ
          : :. : :     ::..  ...:  ::.. :  : :  .        .:.:.:::::
CCDS11 ---P-PAQPPA-----PPASQLSGSQTGGSSSVKKAPHPAVTS-------AGTPKRVIVQ
                      110       120       130              140     

              190       200       210       220       230       240
pF1KE3 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY
       :::.:::::::.:.::::::::.::: . : :.:.:::::::::::::.::::::.::.:
CCDS11 ASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLY
         150       160       170       180       190       200     

              250       260       270       280       290       300
pF1KE3 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL
       .:::. . ..:..:  ::::..::::::.::::::::::::::::::  :: ::.::: .
CCDS11 MLCRDVI-SSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSV
         210        220       230       240       250       260    

              310       320       330       340       350       360
pF1KE3 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH
       :. .: .::..:::::.:::::.:::::                                
CCDS11 INLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKRLLLGLDR                 
          270       280       290       300                        




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:01:40 2016 done: Sun Nov  6 18:01:40 2016
 Total Scan time:  3.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]