Result of FASTA (ccds) for
pFN21AE3142
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3142, 353 aa
1>>>pF1KE3142 353 - 353 aa - 353 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7013+/-0.000837; mu= -3.0389+/- 0.051
mean_var=237.0780+/-47.547, 0's: 0 Z-trim(115.0): 12 B-trim: 0 in 0/53
Lambda= 0.083297
statistics sampled from 15518 (15522) to 15518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.477), width: 16
Scan time: 3.440
The best scores are: opt bits E(32554)
CCDS3265.1 THPO gene_id:7066|Hs108|chr3 ( 353) 2335 293.0 2.6e-79
CCDS54693.1 THPO gene_id:7066|Hs108|chr3 ( 349) 2285 286.9 1.7e-77
CCDS77867.1 THPO gene_id:7066|Hs108|chr3 ( 286) 1035 136.7 2.4e-32
>>CCDS3265.1 THPO gene_id:7066|Hs108|chr3 (353 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1537.3 bits: 293.0 E(32554): 2.6e-79
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)
10 20 30 40 50 60
pF1KE3 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG
310 320 330 340 350
>>CCDS54693.1 THPO gene_id:7066|Hs108|chr3 (349 aa)
initn: 1486 init1: 1486 opt: 2285 Z-score: 1504.9 bits: 286.9 E(32554): 1.7e-77
Smith-Waterman score: 2285; 98.9% identity (98.9% similar) in 353 aa overlap (1-353:1-349)
10 20 30 40 50 60
pF1KE3 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT
:::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLGALQSLLGTQ----GRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT
130 140 150 160 170
190 200 210 220 230 240
pF1KE3 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP
240 250 260 270 280 290
310 320 330 340 350
pF1KE3 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG
300 310 320 330 340
>>CCDS77867.1 THPO gene_id:7066|Hs108|chr3 (286 aa)
initn: 1070 init1: 1029 opt: 1035 Z-score: 694.3 bits: 136.7 E(32554): 2.4e-32
Smith-Waterman score: 1037; 62.3% identity (74.7% similar) in 308 aa overlap (1-300:1-284)
10 20 30 40 50 60
pF1KE3 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRR-----
::::::::::::::::::::::::::::::::::::::: . .:: . :. .
CCDS77 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKD--FWIVGDKLHCLSQNYWLW
130 140 150 160 170
180 190 200 210 220 230
pF1KE3 APPTTA-VPSRTSLVLTLN-ELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLL
: ..: . :. : : ..:. . . : . .:: :.:.. . :
CCDS77 ASEVAAGIQSQDSWSAEPNLQVPGPNPRIPEQD----TRT-----LEWNSW---TLSWTL
180 190 200 210 220
240 250 260 270 280 290
pF1KE3 NQTSRSLDQIPG-YLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGY
.: :: :: .: :.. : .:. : .. :. :: . . .:: . . ..
CCDS77 TQDPRS----PGHFLRNIRHRLPATQ-----PPAWIFSFPNPSSYWT-VYALPSSTHLAH
230 240 250 260 270
300 310 320 330 340 350
pF1KE3 SPSPTHPPTGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQE
.:. ::
CCDS77 PCGPAPPPAS
280
353 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:51:10 2016 done: Sun Nov 6 04:51:10 2016
Total Scan time: 3.440 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]