FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3138, 350 aa
  1>>>pF1KE3138 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4837+/-0.000403; mu= 16.0263+/- 0.025
 mean_var=77.8312+/-15.941, 0's: 0 Z-trim(112.5): 18  B-trim: 653 in 2/50
 Lambda= 0.145378
 statistics sampled from 21472 (21474) to 21472 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.252), width:  16
 Scan time:  7.280

The best scores are:                                      opt bits E(85289)
NP_008846 (OMIM: 300757,312600) protein XRP2 [Homo ( 350) 2393 511.5 1.1e-144
NP_003183 (OMIM: 602971) tubulin-specific chaperon ( 346)  352 83.4 7.8e-16


>>NP_008846 (OMIM: 300757,312600) protein XRP2 [Homo sap  (350 aa)
 initn: 2393 init1: 2393 opt: 2393  Z-score: 2718.7  bits: 511.5 E(85289): 1.1e-144
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KE3 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL
              250       260       270       280       290       300

              310       320       330       340       350
pF1KE3 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI
              310       320       330       340       350

>>NP_003183 (OMIM: 602971) tubulin-specific chaperone C   (346 aa)
 initn: 354 init1: 316 opt: 352  Z-score: 405.2  bits: 83.4 E(85289): 7.8e-16
Smith-Waterman score: 352; 29.9% identity (70.8% similar) in 154 aa overlap (42-192:186-339)

              20        30        40        50        60        70 
pF1KE3 DKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCN
                                     ::.:..... .  . .  .. :. .  ::.
NP_003 PGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCT
         160       170       180       190       200       210     

              80        90       100       110       120       130 
pF1KE3 IYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCC
       . .. .  :. .    .: .. :::. :::...: ::  ..::::.:... .  ..::  
NP_003 VRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQV
         220       230       240       250       260       270     

             140       150       160       170       180           
pF1KE3 ATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGEL---NWSL
       ... :.:. :.:.:. . : :::.  .:...::.  .:.:... ::. .. ..   :::.
NP_003 TSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSI
         280       290       300       310       320       330     

      190       200       210       220       230       240        
pF1KE3 LPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIA
       :::.                                                        
NP_003 LPEEERNIQWD                                                 
         340                                                       




350 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:37:48 2016 done: Sun Nov  6 19:37:49 2016
 Total Scan time:  7.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]