FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3138, 350 aa
  1>>>pF1KE3138 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6749+/-0.00094; mu= 14.8186+/- 0.056
 mean_var=75.0934+/-14.893, 0's: 0 Z-trim(105.6): 18  B-trim: 41 in 1/50
 Lambda= 0.148004
 statistics sampled from 8515 (8519) to 8515 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.262), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS14270.1 RP2 gene_id:6102|Hs108|chrX            ( 350) 2393 520.4  9e-148
CCDS4872.1 TBCC gene_id:6903|Hs108|chr6            ( 346)  352 84.6 1.4e-16


>>CCDS14270.1 RP2 gene_id:6102|Hs108|chrX                 (350 aa)
 initn: 2393 init1: 2393 opt: 2393  Z-score: 2766.5  bits: 520.4 E(32554): 9e-148
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KE3 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL
              250       260       270       280       290       300

              310       320       330       340       350
pF1KE3 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI
              310       320       330       340       350

>>CCDS4872.1 TBCC gene_id:6903|Hs108|chr6                 (346 aa)
 initn: 354 init1: 316 opt: 352  Z-score: 411.3  bits: 84.6 E(32554): 1.4e-16
Smith-Waterman score: 352; 29.9% identity (70.8% similar) in 154 aa overlap (42-192:186-339)

              20        30        40        50        60        70 
pF1KE3 DKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCN
                                     ::.:..... .  . .  .. :. .  ::.
CCDS48 PGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCT
         160       170       180       190       200       210     

              80        90       100       110       120       130 
pF1KE3 IYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCC
       . .. .  :. .    .: .. :::. :::...: ::  ..::::.:... .  ..::  
CCDS48 VRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQV
         220       230       240       250       260       270     

             140       150       160       170       180           
pF1KE3 ATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGEL---NWSL
       ... :.:. :.:.:. . : :::.  .:...::.  .:.:... ::. .. ..   :::.
CCDS48 TSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSI
         280       290       300       310       320       330     

      190       200       210       220       230       240        
pF1KE3 LPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIA
       :::.                                                        
CCDS48 LPEEERNIQWD                                                 
         340                                                       




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:37:47 2016 done: Sun Nov  6 19:37:47 2016
 Total Scan time:  2.560 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]