Result of FASTA (omim) for
pFN21AE3135
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3135, 345 aa
1>>>pF1KE3135 345 - 345 aa - 345 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5453+/-0.000351; mu= 20.6743+/- 0.022
mean_var=64.8548+/-13.836, 0's: 0 Z-trim(113.4): 54 B-trim: 1164 in 1/51
Lambda= 0.159259
statistics sampled from 22625 (22675) to 22625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.266), width: 16
Scan time: 7.570
The best scores are: opt bits E(85289)
NP_077025 (OMIM: 252010,612360) NADH dehydrogenase ( 345) 2333 544.8 1e-154
XP_006723683 (OMIM: 252010,612360) PREDICTED: NADH ( 247) 1609 378.3 9.6e-105
XP_011527644 (OMIM: 252010,612360) PREDICTED: NADH ( 299) 1609 378.4 1.1e-104
XP_006723685 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81
XP_006723686 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81
XP_006723687 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81
XP_016883550 (OMIM: 252010,612360) PREDICTED: NADH ( 188) 1267 299.6 3.5e-81
XP_011527646 (OMIM: 252010,612360) PREDICTED: NADH ( 222) 1267 299.7 4e-81
NP_001034464 (OMIM: 252010,612360) NADH dehydrogen ( 317) 1267 299.8 5.2e-81
XP_011514081 (OMIM: 615733) PREDICTED: probable 18 ( 248) 149 42.9 0.00092
XP_011514080 (OMIM: 615733) PREDICTED: probable 18 ( 271) 149 42.9 0.00098
NP_059998 (OMIM: 615733) probable 18S rRNA (guanin ( 281) 149 42.9 0.001
NP_001189489 (OMIM: 615733) probable 18S rRNA (gua ( 298) 149 42.9 0.001
XP_006715910 (OMIM: 615733) PREDICTED: probable 18 ( 304) 149 42.9 0.0011
>>NP_077025 (OMIM: 252010,612360) NADH dehydrogenase [ub (345 aa)
initn: 2333 init1: 2333 opt: 2333 Z-score: 2898.6 bits: 544.8 E(85289): 1e-154
Smith-Waterman score: 2333; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
250 260 270 280 290 300
310 320 330 340
pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_077 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
310 320 330 340
>>XP_006723683 (OMIM: 252010,612360) PREDICTED: NADH deh (247 aa)
initn: 1609 init1: 1609 opt: 1609 Z-score: 2001.5 bits: 378.3 E(85289): 9.6e-105
Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
XP_006 KALIDNV
>>XP_011527644 (OMIM: 252010,612360) PREDICTED: NADH deh (299 aa)
initn: 1609 init1: 1609 opt: 1609 Z-score: 2000.4 bits: 378.4 E(85289): 1.1e-104
Smith-Waterman score: 1609; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
XP_011 QGAWASRAPDVGKEPPGREELTGWRTRLGTEENPGGFTPVTSVDLLLTFKWPESIETAS
250 260 270 280 290
>>XP_006723685 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa)
initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81
Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188)
130 140 150 160 170 180
pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM
: ::::::::::::::::::::::::::::
XP_006 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM
10 20 30
190 200 210 220 230 240
pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
100 110 120 130 140 150
310 320 330 340
pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::
XP_006 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
160 170 180
>>XP_006723686 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa)
initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81
Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188)
130 140 150 160 170 180
pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM
: ::::::::::::::::::::::::::::
XP_006 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM
10 20 30
190 200 210 220 230 240
pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
100 110 120 130 140 150
310 320 330 340
pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::
XP_006 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
160 170 180
>>XP_006723687 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa)
initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81
Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188)
130 140 150 160 170 180
pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM
: ::::::::::::::::::::::::::::
XP_006 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM
10 20 30
190 200 210 220 230 240
pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
100 110 120 130 140 150
310 320 330 340
pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::
XP_006 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
160 170 180
>>XP_016883550 (OMIM: 252010,612360) PREDICTED: NADH deh (188 aa)
initn: 1267 init1: 1267 opt: 1267 Z-score: 1578.4 bits: 299.6 E(85289): 3.5e-81
Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:2-188)
130 140 150 160 170 180
pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM
: ::::::::::::::::::::::::::::
XP_016 MLCLHWVNDLPRALEQIHYILKPDGVFIGAM
10 20 30
190 200 210 220 230 240
pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
100 110 120 130 140 150
310 320 330 340
pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::
XP_016 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
160 170 180
>>XP_011527646 (OMIM: 252010,612360) PREDICTED: NADH deh (222 aa)
initn: 1267 init1: 1267 opt: 1267 Z-score: 1577.4 bits: 299.7 E(85289): 4e-81
Smith-Waterman score: 1267; 99.5% identity (99.5% similar) in 187 aa overlap (159-345:36-222)
130 140 150 160 170 180
pF1KE3 SETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAM
: ::::::::::::::::::::::::::::
XP_011 QGPLLLSRSLLVQIFKKLLESFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAM
10 20 30 40 50 60
190 200 210 220 230 240
pF1KE3 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY
70 80 90 100 110 120
250 260 270 280 290 300
pF1KE3 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIG
130 140 150 160 170 180
310 320 330 340
pF1KE3 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::
XP_011 WKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
190 200 210 220
>>NP_001034464 (OMIM: 252010,612360) NADH dehydrogenase (317 aa)
initn: 2013 init1: 1267 opt: 1267 Z-score: 1575.4 bits: 299.8 E(85289): 5.2e-81
Smith-Waterman score: 1956; 86.4% identity (89.3% similar) in 345 aa overlap (1-345:1-317)
10 20 30 40 50 60
pF1KE3 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI
::::::::::::::::::::::::::::::::::::::::::::::::: ..:.
NP_001 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKL---QLFHC--
70 80 90 100 110
130 140 150 160 170 180
pF1KE3 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP
.. :.. :. . . : ::::::::::::::::::::
NP_001 -RKLLESFSKLTLQKM----------------------LCLHWVNDLPRALEQIHYILKP
120 130 140 150
190 200 210 220 230 240
pF1KE3 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
220 230 240 250 260 270
310 320 330 340
pF1KE3 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
280 290 300 310
>>XP_011514081 (OMIM: 615733) PREDICTED: probable 18S rR (248 aa)
initn: 66 init1: 66 opt: 149 Z-score: 188.6 bits: 42.9 E(85289): 0.00092
Smith-Waterman score: 149; 30.5% identity (61.0% similar) in 105 aa overlap (74-172:34-136)
50 60 70 80 90
pF1KE3 LNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDI---PRNFP-LALDLGCG
.. .:.: :. .. :.: : ::.:::
XP_011 RGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDIGCG
10 20 30 40 50 60
100 110 120 130 140 150
pF1KE3 RGYIAQYLNKETIGKFFQA-DIAENALKNSSETEIPTVSVLADE-EFLPFKENTFDLVVS
: ..::. : :... . ::. : .. . :: .:.: . .::: .::: .:
XP_011 TGLSGSYLSDE--GHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCIS
70 80 90 100 110 120
160 170 180 190 200 210
pF1KE3 SLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHIS
...:. . . :
XP_011 ISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATKA
130 140 150 160 170 180
345 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:07:20 2016 done: Sun Nov 6 13:07:22 2016
Total Scan time: 7.570 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]