Result of FASTA (omim) for
pFN21AE3134
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3134, 340 aa
1>>>pF1KE3134 340 - 340 aa - 340 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6644+/-0.000375; mu= 20.3450+/- 0.023
mean_var=68.5530+/-13.791, 0's: 0 Z-trim(112.8): 27 B-trim: 139 in 2/50
Lambda= 0.154903
statistics sampled from 21812 (21834) to 21812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.256), width: 16
Scan time: 7.970
The best scores are: opt bits E(85289)
NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 565 135.3 1.9e-31
NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 565 135.3 1.9e-31
NP_950245 (OMIM: 615394) 5-methylcytosine rRNA met ( 384) 565 135.3 2.1e-31
NP_001245239 (OMIM: 164031) probable 28S rRNA (cyt ( 628) 278 71.4 6e-12
NP_006161 (OMIM: 164031) probable 28S rRNA (cytosi ( 808) 278 71.5 7.2e-12
NP_001028886 (OMIM: 164031) probable 28S rRNA (cyt ( 808) 278 71.5 7.2e-12
XP_005253748 (OMIM: 164031) PREDICTED: probable 28 ( 812) 278 71.5 7.2e-12
NP_001245237 (OMIM: 164031) probable 28S rRNA (cyt ( 812) 278 71.5 7.2e-12
NP_001245238 (OMIM: 164031) probable 28S rRNA (cyt ( 845) 278 71.5 7.4e-12
NP_001161820 (OMIM: 615732) probable 28S rRNA (cyt ( 391) 188 51.1 4.8e-06
NP_060514 (OMIM: 615732) probable 28S rRNA (cytosi ( 429) 188 51.1 5.1e-06
NP_683759 (OMIM: 615732) probable 28S rRNA (cytosi ( 466) 188 51.1 5.5e-06
NP_001161819 (OMIM: 615732) probable 28S rRNA (cyt ( 470) 188 51.1 5.5e-06
NP_001180384 (OMIM: 610916,611091) tRNA (cytosine( ( 732) 166 46.4 0.00023
NP_060225 (OMIM: 610916,611091) tRNA (cytosine(34) ( 767) 164 46.0 0.00032
>>NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA meth (335 aa)
initn: 534 init1: 206 opt: 565 Z-score: 685.7 bits: 135.3 E(85289): 1.9e-31
Smith-Waterman score: 597; 35.8% identity (63.6% similar) in 335 aa overlap (29-333:3-333)
10 20 30 40 50
pF1KE3 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPSCWQYAVLLNRF-
:: ..:: : ..: : : . .:..:.: :
NP_001 MTYSVQFGDLWPSIRVSLLSEQ--KYGALVNNFA
10 20 30
60 70 80 90
pF1KE3 ---NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SVKCY-LSRTP-GR
. .:: ::. .. .. :.:. :. ...:. ..: .:
NP_001 AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISR
40 50 60 70 80 90
100 110 120 130 140 150
pF1KE3 IPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLH
.: : .. .:::..:::::::::: :. :. :::::::::::..:::: .: :
NP_001 FPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLA
100 110 120 130 140 150
160 170 180 190 200 210
pF1KE3 CNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMFDKVLVDAPCSND
:. . :. :.. :.:..:. . : ..:. :::: :. . . .:.::::.::..:
NP_001 ANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTD
160 170 180 190 200 210
220 230 240 250 260 270
pF1KE3 RSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDV
: : ... : : : ..:. ::.::..:: ... : .::: .:::::.::. .:. :
NP_001 RHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYV
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE3 IS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVAK
.. :.: .. .:. . :. . :. : : . : : ::::. .:::: :
NP_001 VQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPNLMANFGPMYFCK
280 290 300 310 320 330
340
pF1KE3 LKKSWSTGKW
...
NP_001 MRRLT
>>NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA meth (335 aa)
initn: 534 init1: 206 opt: 565 Z-score: 685.7 bits: 135.3 E(85289): 1.9e-31
Smith-Waterman score: 597; 35.8% identity (63.6% similar) in 335 aa overlap (29-333:3-333)
10 20 30 40 50
pF1KE3 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPSCWQYAVLLNRF-
:: ..:: : ..: : : . .:..:.: :
NP_001 MTYSVQFGDLWPSIRVSLLSEQ--KYGALVNNFA
10 20 30
60 70 80 90
pF1KE3 ---NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SVKCY-LSRTP-GR
. .:: ::. .. .. :.:. :. ...:. ..: .:
NP_001 AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISR
40 50 60 70 80 90
100 110 120 130 140 150
pF1KE3 IPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLH
.: : .. .:::..:::::::::: :. :. :::::::::::..:::: .: :
NP_001 FPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLA
100 110 120 130 140 150
160 170 180 190 200 210
pF1KE3 CNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMFDKVLVDAPCSND
:. . :. :.. :.:..:. . : ..:. :::: :. . . .:.::::.::..:
NP_001 ANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTD
160 170 180 190 200 210
220 230 240 250 260 270
pF1KE3 RSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDV
: : ... : : : ..:. ::.::..:: ... : .::: .:::::.::. .:. :
NP_001 RHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYV
220 230 240 250 260 270
280 290 300 310 320 330
pF1KE3 IS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVAK
.. :.: .. .:. . :. . :. : : . : : ::::. .:::: :
NP_001 VQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPNLMANFGPMYFCK
280 290 300 310 320 330
340
pF1KE3 LKKSWSTGKW
...
NP_001 MRRLT
>>NP_950245 (OMIM: 615394) 5-methylcytosine rRNA methylt (384 aa)
initn: 534 init1: 206 opt: 565 Z-score: 684.9 bits: 135.3 E(85289): 2.1e-31
Smith-Waterman score: 614; 35.4% identity (64.1% similar) in 345 aa overlap (19-333:42-382)
10 20 30 40
pF1KE3 MLTQLKAKSEGKLAKQICKVVLDHFEKQYSKELGDAWNTVREILTSPS
...:..:. :: ..:: : ..: : : .
NP_950 LLKRVDLATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSEQ
20 30 40 50 60 70
50 60 70 80
pF1KE3 CWQYAVLLNRF----NYPFELE----KDL---HLKGYHTLSQGSLPNYPK--------SV
.:..:.: : . .:: ::. .. .. :.:. :. ..
NP_950 --KYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNL
80 90 100 110 120
90 100 110 120 130 140
pF1KE3 KCY-LSRTP-GRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSI
.:. ..: .:.: : .. .:::..:::::::::: :. :. :::::::::::..
NP_950 RCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTL
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE3 ALLQCACPGYLHCNEYDSLRLRWLRQTLESFIPQPLI--NVIKVSELDGRKMGDAQPEMF
:::: .: : :. . :. :.. :.:..:. . : ..:. :::: :. . . .
NP_950 ALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE3 DKVLVDAPCSNDRSWLFSSDSQ--KASCRISQRRNLPLLQIELLRSAIKALRPGGILVYS
:.::::.::..:: : ... : : : ..:. ::.::..:: ... : .::: .:::
NP_950 DRVLVDVPCTTDRHSLHEEENNIFKRS-RKKERQILPVLQVQLLAAGLLATKPGGHVVYS
250 260 270 280 290 300
270 280 290 300 310
pF1KE3 TCTLSKAENQDVIS---EILNSHGNIMPM--DIKGIARTCSHDFTFAPTGQECGLLVIPD
::.::. .:. :.. :.: .. .:. . :. . :. : : . : : ::::.
NP_950 TCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQ-VGELVIPN
310 320 330 340 350 360
320 330 340
pF1KE3 KGKAWGPMYVAKLKKSWSTGKW
.:::: :...
NP_950 LMANFGPMYFCKMRRLT
370 380
>>NP_001245239 (OMIM: 164031) probable 28S rRNA (cytosin (628 aa)
initn: 271 init1: 137 opt: 278 Z-score: 335.5 bits: 71.4 E(85289): 6e-12
Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:362-582)
90 100 110 120 130 140
pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP
:.: .:.:.:::.:: .. :..::.: ::
NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
150 160 170 180 190 200
pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ
:::. . : : . :. .. ::. . .:. . . :.: .:. :::..
NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF----
400 410 420 430 440
210 220 230 240 250
pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL--
:.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: ..
NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA
450 460 470 480 490 500
260 270 280 290 300
pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ
. :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. .
NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR
510 520 530 540 550 560
310 320 330 340
pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW
. : . : ...::.::
NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTDGVLLCRSGWTAVVQSQLIATSTFQV
570 580 590 600 610
>>NP_006161 (OMIM: 164031) probable 28S rRNA (cytosine(4 (808 aa)
initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12
Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:362-582)
90 100 110 120 130 140
pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP
:.: .:.:.:::.:: .. :..::.: ::
NP_006 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
150 160 170 180 190 200
pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ
:::. . : : . :. .. ::. . .:. . . :.: .:. :::..
NP_006 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF----
400 410 420 430 440
210 220 230 240 250
pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL--
:.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: ..
NP_006 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA
450 460 470 480 490 500
260 270 280 290 300
pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ
. :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. .
NP_006 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR
510 520 530 540 550 560
310 320 330 340
pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW
. : . : ...::.::
NP_006 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP
570 580 590 600 610
>>NP_001028886 (OMIM: 164031) probable 28S rRNA (cytosin (808 aa)
initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12
Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:362-582)
90 100 110 120 130 140
pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP
:.: .:.:.:::.:: .. :..::.: ::
NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
150 160 170 180 190 200
pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ
:::. . : : . :. .. ::. . .:. . . :.: .:. :::..
NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF----
400 410 420 430 440
210 220 230 240 250
pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL--
:.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: ..
NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA
450 460 470 480 490 500
260 270 280 290 300
pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ
. :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. .
NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR
510 520 530 540 550 560
310 320 330 340
pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW
. : . : ...::.::
NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP
570 580 590 600 610
>>XP_005253748 (OMIM: 164031) PREDICTED: probable 28S rR (812 aa)
initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12
Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:366-586)
90 100 110 120 130 140
pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP
:.: .:.:.:::.:: .. :..::.: ::
XP_005 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
150 160 170 180 190 200
pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ
:::. . : : . :. .. ::. . .:. . . :.: .:. :::..
XP_005 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF----
400 410 420 430 440
210 220 230 240 250
pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL--
:.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: ..
XP_005 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA
450 460 470 480 490 500
260 270 280 290 300
pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ
. :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. .
XP_005 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR
510 520 530 540 550 560
310 320 330 340
pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW
. : . : ...::.::
XP_005 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP
570 580 590 600 610 620
>>NP_001245237 (OMIM: 164031) probable 28S rRNA (cytosin (812 aa)
initn: 271 init1: 137 opt: 278 Z-score: 334.1 bits: 71.5 E(85289): 7.2e-12
Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:366-586)
90 100 110 120 130 140
pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP
:.: .:.:.:::.:: .. :..::.: ::
NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
340 350 360 370 380 390
150 160 170 180 190 200
pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ
:::. . : : . :. .. ::. . .:. . . :.: .:. :::..
NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF----
400 410 420 430 440
210 220 230 240 250
pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL--
:.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: ..
NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA
450 460 470 480 490 500
260 270 280 290 300
pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ
. :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. .
NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR
510 520 530 540 550 560
310 320 330 340
pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW
. : . : ...::.::
NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP
570 580 590 600 610 620
>>NP_001245238 (OMIM: 164031) probable 28S rRNA (cytosin (845 aa)
initn: 271 init1: 137 opt: 278 Z-score: 333.8 bits: 71.5 E(85289): 7.4e-12
Smith-Waterman score: 278; 31.2% identity (60.7% similar) in 234 aa overlap (113-333:399-619)
90 100 110 120 130 140
pF1KE3 PNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAP
:.: .:.:.:::.:: .. :..::.: ::
NP_001 DPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAP
370 380 390 400 410 420
150 160 170 180 190 200
pF1KE3 GGKSIALLQCA-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQ
:::. . : : . :. .. ::. . .:. . . :.: .:. :::..
NP_001 GGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL---GVTNTI-ISHYDGRQF----
430 440 450 460 470 480
210 220 230 240 250
pF1KE3 PEM---FDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNL--PLLQIELLRSAIKAL--
:.. ::.::.:::::. . ..:.: . . ... : :: ::: ::: ..
NP_001 PKVVGGFDRVLLDAPCSG--TGVISKDPAVKTNK-DEKDILRCAHLQKELLLSAIDSVNA
490 500 510 520 530
260 270 280 290 300
pF1KE3 --RPGGILVYSTCTLSKAENQDVISEILNSHG-NIMP--MDIKGIARTCSHDFTFAPTGQ
. :: ::: ::... ::. :.. :.... ..: .:. . : .. : :. .
NP_001 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR
540 550 560 570 580 590
310 320 330 340
pF1KE3 ECGLLVIPDKGKAWGPMYVAKLKKSWSTGKW
. : . : ...::.::
NP_001 STRRFY-PHTHNMDG-FFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQP
600 610 620 630 640 650
>>NP_001161820 (OMIM: 615732) probable 28S rRNA (cytosin (391 aa)
initn: 167 init1: 95 opt: 188 Z-score: 229.5 bits: 51.1 E(85289): 4.8e-06
Smith-Waterman score: 188; 26.3% identity (53.6% similar) in 224 aa overlap (68-283:132-339)
40 50 60 70 80 90
pF1KE3 NTVREILTSPSCWQYAVLLNRFNYPFELEKDLH-LKGYHTLSQGSLPNYPKSVKCYLSRT
::. ::: : : . .:. :
NP_001 VNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE--------LLVF
110 120 130 140 150
100 110 120 130 140 150
pF1KE3 PGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKS---IALLQCA
:.. ..: . . : . :: ::.. :. : .:.: :::::.:. :::.
NP_001 PAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN-
160 170 180 190 200 210
160 170 180 190 200 210
pF1KE3 CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFD--KVLVD
: . . :. :: .. ... . .. ...: : .. ..:.. . .:.:
NP_001 -QGKIFAFDLDAKRL----ASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD
220 230 240 250 260
220 230 240 250 260
pF1KE3 APCSNDRSWLFSSDSQKASCRISQRRNLPLLQIELLRSAIKALRPGGI--LVYSTCTLSK
::. : . : . .. . . : : :. .:: .. ::::::.: .
NP_001 PSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQ
270 280 290 300 310 320
270 280 290 300 310 320
pF1KE3 AENQDVISEILNSHGNIMPMDIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVA
::.::. . :...
NP_001 EENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIE
330 340 350 360 370 380
340 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:21:53 2016 done: Mon Nov 7 03:21:54 2016
Total Scan time: 7.970 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]