FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3132, 336 aa 1>>>pF1KE3132 336 - 336 aa - 336 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4525+/-0.000369; mu= 7.5117+/- 0.023 mean_var=140.4606+/-27.097, 0's: 0 Z-trim(117.4): 40 B-trim: 0 in 0/55 Lambda= 0.108217 statistics sampled from 29370 (29407) to 29370 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.345), width: 16 Scan time: 8.430 The best scores are: opt bits E(85289) NP_001135888 (OMIM: 260600,603605) aminoacyl tRNA ( 336) 2161 348.6 1.1e-95 NP_001135887 (OMIM: 260600,603605) aminoacyl tRNA ( 312) 2007 324.5 1.8e-88 NP_004748 (OMIM: 260600,603605) aminoacyl tRNA syn ( 312) 2007 324.5 1.8e-88 XP_016864325 (OMIM: 260600,603605) PREDICTED: amin ( 312) 2007 324.5 1.8e-88 XP_016864324 (OMIM: 260600,603605) PREDICTED: amin ( 312) 2007 324.5 1.8e-88 XP_011540649 (OMIM: 603623,608323) PREDICTED: tyro ( 318) 597 104.4 3.4e-22 XP_016858140 (OMIM: 603623,608323) PREDICTED: tyro ( 318) 597 104.4 3.4e-22 XP_011540650 (OMIM: 603623,608323) PREDICTED: tyro ( 318) 597 104.4 3.4e-22 NP_003671 (OMIM: 603623,608323) tyrosine--tRNA lig ( 528) 597 104.5 5.1e-22 >>NP_001135888 (OMIM: 260600,603605) aminoacyl tRNA synt (336 aa) initn: 2161 init1: 2161 opt: 2161 Z-score: 1838.8 bits: 348.6 E(85289): 1.1e-95 Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 336 aa overlap (1-336:1-336) 10 20 30 40 50 60 pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP 250 260 270 280 290 300 310 320 330 pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK :::::::::::::::::::::::::::::::::::: NP_001 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 310 320 330 >>NP_001135887 (OMIM: 260600,603605) aminoacyl tRNA synt (312 aa) initn: 2007 init1: 2007 opt: 2007 Z-score: 1709.3 bits: 324.5 E(85289): 1.8e-88 Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 312 aa overlap (25-336:1-312) 10 20 30 40 50 60 pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA :::::::::::::::::::::::::::::::::::: NP_001 MANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA 10 20 30 70 80 90 100 110 120 pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP 220 230 240 250 260 270 310 320 330 pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK :::::::::::::::::::::::::::::::::::: NP_001 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 280 290 300 310 >>NP_004748 (OMIM: 260600,603605) aminoacyl tRNA synthas (312 aa) initn: 2007 init1: 2007 opt: 2007 Z-score: 1709.3 bits: 324.5 E(85289): 1.8e-88 Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 312 aa overlap (25-336:1-312) 10 20 30 40 50 60 pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA :::::::::::::::::::::::::::::::::::: NP_004 MANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA 10 20 30 70 80 90 100 110 120 pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP 220 230 240 250 260 270 310 320 330 pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK :::::::::::::::::::::::::::::::::::: NP_004 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 280 290 300 310 >>XP_016864325 (OMIM: 260600,603605) PREDICTED: aminoacy (312 aa) initn: 2007 init1: 2007 opt: 2007 Z-score: 1709.3 bits: 324.5 E(85289): 1.8e-88 Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 312 aa overlap (25-336:1-312) 10 20 30 40 50 60 pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA :::::::::::::::::::::::::::::::::::: XP_016 MANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA 10 20 30 70 80 90 100 110 120 pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP 220 230 240 250 260 270 310 320 330 pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK :::::::::::::::::::::::::::::::::::: XP_016 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 280 290 300 310 >>XP_016864324 (OMIM: 260600,603605) PREDICTED: aminoacy (312 aa) initn: 2007 init1: 2007 opt: 2007 Z-score: 1709.3 bits: 324.5 E(85289): 1.8e-88 Smith-Waterman score: 2007; 100.0% identity (100.0% similar) in 312 aa overlap (25-336:1-312) 10 20 30 40 50 60 pF1KE3 MLPAVAVSEPVVLRFMIFCRLLAKMANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA :::::::::::::::::::::::::::::::::::: XP_016 MANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKA 10 20 30 70 80 90 100 110 120 pF1KE3 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ILQATLREEKKLRVENAKLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPA 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQP 220 230 240 250 260 270 310 320 330 pF1KE3 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK :::::::::::::::::::::::::::::::::::: XP_016 DLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 280 290 300 310 >>XP_011540649 (OMIM: 603623,608323) PREDICTED: tyrosine (318 aa) initn: 564 init1: 391 opt: 597 Z-score: 519.5 bits: 104.4 E(85289): 3.4e-22 Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (147-332:122-316) 120 130 140 150 160 170 pF1KE3 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI : .:. . . .::. .: : : .:.: XP_011 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI .: ::::.:.: :::..:::::::::::..:::: :::::::::. :: :..:.:.:. XP_011 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL .:::::: ::::: ::.:..::: ...: : :: ::.::... .. :.::.:: XP_011 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL 220 230 240 250 260 270 290 300 310 320 330 pF1KE3 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK .::::..:..: :.. ..::.: .: . : .: :. :.. .: XP_011 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 280 290 300 310 >>XP_016858140 (OMIM: 603623,608323) PREDICTED: tyrosine (318 aa) initn: 564 init1: 391 opt: 597 Z-score: 519.5 bits: 104.4 E(85289): 3.4e-22 Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (147-332:122-316) 120 130 140 150 160 170 pF1KE3 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI : .:. . . .::. .: : : .:.: XP_016 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI .: ::::.:.: :::..:::::::::::..:::: :::::::::. :: :..:.:.:. XP_016 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL .:::::: ::::: ::.:..::: ...: : :: ::.::... .. :.::.:: XP_016 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL 220 230 240 250 260 270 290 300 310 320 330 pF1KE3 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK .::::..:..: :.. ..::.: .: . : .: :. :.. .: XP_016 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 280 290 300 310 >>XP_011540650 (OMIM: 603623,608323) PREDICTED: tyrosine (318 aa) initn: 564 init1: 391 opt: 597 Z-score: 519.5 bits: 104.4 E(85289): 3.4e-22 Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (147-332:122-316) 120 130 140 150 160 170 pF1KE3 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI : .:. . . .::. .: : : .:.: XP_011 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI .: ::::.:.: :::..:::::::::::..:::: :::::::::. :: :..:.:.:. XP_011 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL .:::::: ::::: ::.:..::: ...: : :: ::.::... .. :.::.:: XP_011 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL 220 230 240 250 260 270 290 300 310 320 330 pF1KE3 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK .::::..:..: :.. ..::.: .: . : .: :. :.. .: XP_011 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 280 290 300 310 >>NP_003671 (OMIM: 603623,608323) tyrosine--tRNA ligase, (528 aa) initn: 564 init1: 391 opt: 597 Z-score: 516.3 bits: 104.5 E(85289): 5.1e-22 Smith-Waterman score: 597; 48.7% identity (76.4% similar) in 195 aa overlap (147-332:332-526) 120 130 140 150 160 170 pF1KE3 SENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQSIA-GSA-DSKPI : .:. . . .::. .: : : .:.: NP_003 EVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPE 310 320 330 340 350 360 180 190 200 210 220 230 pF1KE3 DV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI .: ::::.:.: :::..:::::::::::..:::: :::::::::. :: :..:.:.:. NP_003 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV 370 380 390 400 410 420 240 250 260 270 280 pF1KE3 LLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSVPGDRITFDAFP-GEPDKEL .:::::: ::::: ::.:..::: ...: : :: ::.::... .. :.::.:: NP_003 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL 430 440 450 460 470 480 290 300 310 320 330 pF1KE3 NPKKKIWEQIQPDLHTNDECVATYKGVPFEVK-GKGVCRAQTMSNSGIK .::::..:..: :.. ..::.: .: . : .: :. :.. .: NP_003 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 490 500 510 520 336 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:19:55 2016 done: Sun Nov 6 17:19:56 2016 Total Scan time: 8.430 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]