FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3129, 322 aa
  1>>>pF1KE3129 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4531+/-0.000912; mu= 14.0874+/- 0.054
 mean_var=51.3617+/-10.275, 0's: 0 Z-trim(102.9): 30  B-trim: 0 in 0/49
 Lambda= 0.178959
 statistics sampled from 7149 (7162) to 7149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.22), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS1762.1 RBKS gene_id:64080|Hs108|chr2           ( 322) 2060 539.8 1.1e-153


>>CCDS1762.1 RBKS gene_id:64080|Hs108|chr2                (322 aa)
 initn: 2060 init1: 2060 opt: 2060  Z-score: 2872.6  bits: 539.8 E(32554): 1.1e-153
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KE3 MAASGEPQRQWQEEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MAASGEPQRQWQEEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 IVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 IVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 AIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 CVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAV
              250       260       270       280       290       300

              310       320  
pF1KE3 SVQAAGTQSSYPYKKDLPLTLF
       ::::::::::::::::::::::
CCDS17 SVQAAGTQSSYPYKKDLPLTLF
              310       320  




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:34:59 2016 done: Sun Nov  6 18:34:59 2016
 Total Scan time:  2.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]