Result of FASTA (omim) for
pFN21AE3120
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3120, 299 aa
1>>>pF1KE3120 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1237+/-0.000361; mu= 16.5184+/- 0.023
mean_var=65.2298+/-13.053, 0's: 0 Z-trim(113.2): 27 B-trim: 0 in 0/55
Lambda= 0.158800
statistics sampled from 22360 (22379) to 22360 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.262), width: 16
Scan time: 7.570
The best scores are: opt bits E(85289)
NP_005435 (OMIM: 612054) cell differentiation prot ( 299) 1944 454.1 1.5e-127
XP_016860737 (OMIM: 612054) PREDICTED: cell differ ( 245) 1600 375.2 6.9e-104
NP_001258564 (OMIM: 612054) cell differentiation p ( 258) 1572 368.8 6.1e-102
XP_011510440 (OMIM: 612054) PREDICTED: cell differ ( 246) 1507 353.9 1.8e-97
XP_016860738 (OMIM: 612054) PREDICTED: cell differ ( 205) 1135 268.7 7e-72
NP_001258563 (OMIM: 612054) cell differentiation p ( 331) 1025 243.6 4e-64
>>NP_005435 (OMIM: 612054) cell differentiation protein (299 aa)
initn: 1944 init1: 1944 opt: 1944 Z-score: 2410.8 bits: 454.1 E(85289): 1.5e-127
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
250 260 270 280 290
>>XP_016860737 (OMIM: 612054) PREDICTED: cell differenti (245 aa)
initn: 1600 init1: 1600 opt: 1600 Z-score: 1986.1 bits: 375.2 E(85289): 6.9e-104
Smith-Waterman score: 1600; 100.0% identity (100.0% similar) in 245 aa overlap (55-299:1-245)
30 40 50 60 70 80
pF1KE3 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA
::::::::::::::::::::::::::::::
XP_016 MLWHSFGTIAALLQEIVNIYPSINPPTLTA
10 20 30
90 100 110 120 130 140
pF1KE3 HQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIG
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 ALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE3 RFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQ
160 170 180 190 200 210
270 280 290
pF1KE3 VLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
:::::::::::::::::::::::::::::::::::
XP_016 VLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
220 230 240
>>NP_001258564 (OMIM: 612054) cell differentiation prote (258 aa)
initn: 1572 init1: 1572 opt: 1572 Z-score: 1951.1 bits: 368.8 E(85289): 6.1e-102
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
::::
NP_001 DNPRFSDLTFCWSSFQRK
250
>>XP_011510440 (OMIM: 612054) PREDICTED: cell differenti (246 aa)
initn: 1507 init1: 1507 opt: 1507 Z-score: 1871.0 bits: 353.9 E(85289): 1.8e-97
Smith-Waterman score: 1507; 99.6% identity (100.0% similar) in 232 aa overlap (68-299:15-246)
40 50 60 70 80 90
pF1KE3 ALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL
.:::::::::::::::::::::::::::::
XP_011 MTGGGRWKVEYKDHKEIVNIYPSINPPTLTAHQSNRVCNALALL
10 20 30 40
100 110 120 130 140 150
pF1KE3 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINF
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE3 LLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMV
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE3 LQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLA
170 180 190 200 210 220
280 290
pF1KE3 QLVKNLQEGQVTDPRGIPLPPQ
::::::::::::::::::::::
XP_011 QLVKNLQEGQVTDPRGIPLPPQ
230 240
>>XP_016860738 (OMIM: 612054) PREDICTED: cell differenti (205 aa)
initn: 1135 init1: 1135 opt: 1135 Z-score: 1411.5 bits: 268.7 E(85289): 7e-72
Smith-Waterman score: 1135; 99.4% identity (100.0% similar) in 177 aa overlap (68-244:15-191)
40 50 60 70 80 90
pF1KE3 ALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL
.:::::::::::::::::::::::::::::
XP_016 MTGGGRWKVEYKDHKEIVNIYPSINPPTLTAHQSNRVCNALALL
10 20 30 40
100 110 120 130 140 150
pF1KE3 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINF
50 60 70 80 90 100
160 170 180 190 200 210
pF1KE3 LLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMV
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE3 LQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLA
:::::::::::::::::::::::::::
XP_016 LQLSKEPSARLLKHVVRCYLRLSDNPRFSDLTFCWSSFQRK
170 180 190 200
>>NP_001258563 (OMIM: 612054) cell differentiation prote (331 aa)
initn: 1025 init1: 1025 opt: 1025 Z-score: 1272.3 bits: 243.6 E(85289): 4e-64
Smith-Waterman score: 1870; 90.3% identity (90.3% similar) in 331 aa overlap (1-299:1-331)
10 20 30 40 50 60
pF1KE3 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
70 80 90 100 110 120
130 140
pF1KE3 PFLHTVSKTRPFEYLRLTSLGVI--------------------------------GALVK
::::::::::::::::::::::: :::::
NP_001 PFLHTVSKTRPFEYLRLTSLGVIVETGFHHVGQADLELPTSSDLPASASQSAGITGALVK
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE3 TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSH
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE3 VAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKD
250 260 270 280 290 300
270 280 290
pF1KE3 DTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
:::::::::::::::::::::::::::::::
NP_001 DTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
310 320 330
299 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:05:49 2016 done: Sun Nov 6 12:05:50 2016
Total Scan time: 7.570 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]