Result of FASTA (omim) for
pFN21AE3119
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3119, 293 aa
1>>>pF1KE3119 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1750+/-0.000326; mu= 15.4094+/- 0.020
mean_var=64.5639+/-13.126, 0's: 0 Z-trim(114.8): 72 B-trim: 0 in 0/51
Lambda= 0.159617
statistics sampled from 24804 (24879) to 24804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.292), width: 16
Scan time: 5.460
The best scores are: opt bits E(85289)
XP_005263508 (OMIM: 605647) PREDICTED: F-box only ( 293) 2065 484.2 1.3e-136
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293) 2065 484.2 1.3e-136
XP_016856496 (OMIM: 605647) PREDICTED: F-box only ( 293) 2065 484.2 1.3e-136
XP_005263505 (OMIM: 605647) PREDICTED: F-box only ( 293) 2065 484.2 1.3e-136
XP_006710634 (OMIM: 605647) PREDICTED: F-box only ( 293) 2065 484.2 1.3e-136
XP_005263506 (OMIM: 605647) PREDICTED: F-box only ( 293) 2065 484.2 1.3e-136
XP_011539534 (OMIM: 605647) PREDICTED: F-box only ( 293) 2065 484.2 1.3e-136
NP_001014765 (OMIM: 609111) F-box only protein 44 ( 255) 1352 320.0 3e-87
NP_001291720 (OMIM: 609111) F-box only protein 44 ( 255) 1352 320.0 3e-87
XP_006711108 (OMIM: 609111) PREDICTED: F-box only ( 255) 1352 320.0 3e-87
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255) 1352 320.0 3e-87
XP_016858332 (OMIM: 609111) PREDICTED: F-box only ( 255) 1352 320.0 3e-87
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296) 895 214.8 1.6e-55
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224) 692 168.0 1.5e-41
XP_016858333 (OMIM: 609111) PREDICTED: F-box only ( 224) 692 168.0 1.5e-41
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224) 692 168.0 1.5e-41
NP_001291719 (OMIM: 609111) F-box only protein 44 ( 224) 692 168.0 1.5e-41
XP_011540737 (OMIM: 609111) PREDICTED: F-box only ( 256) 684 166.2 6.1e-41
XP_005263593 (OMIM: 609111) PREDICTED: F-box only ( 256) 684 166.2 6.1e-41
XP_016858331 (OMIM: 609111) PREDICTED: F-box only ( 256) 684 166.2 6.1e-41
NP_001317284 (OMIM: 609111) F-box only protein 44 ( 256) 684 166.2 6.1e-41
XP_006711106 (OMIM: 609111) PREDICTED: F-box only ( 256) 684 166.2 6.1e-41
XP_005263594 (OMIM: 609111) PREDICTED: F-box only ( 256) 684 166.2 6.1e-41
NP_849142 (OMIM: 609099) F-box only protein 27 [Ho ( 283) 676 164.3 2.4e-40
XP_016881779 (OMIM: 609099) PREDICTED: F-box only ( 249) 502 124.2 2.5e-28
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278) 492 122.0 1.3e-27
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287) 492 122.0 1.4e-27
NP_001001414 (OMIM: 615901) F-box only protein 50 ( 275) 337 86.3 7.4e-17
XP_011525208 (OMIM: 615901) PREDICTED: F-box only ( 195) 186 51.4 1.6e-06
NP_001245140 (OMIM: 608519) F-box only protein 16 ( 280) 138 40.4 0.0047
NP_758954 (OMIM: 608519) F-box only protein 16 iso ( 292) 138 40.5 0.0048
>>XP_005263508 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>NP_060908 (OMIM: 605647) F-box only protein 6 [Homo sa (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>XP_016856496 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>XP_005263505 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>XP_006710634 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>XP_005263506 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>XP_011539534 (OMIM: 605647) PREDICTED: F-box only prot (293 aa)
initn: 2065 init1: 2065 opt: 2065 Z-score: 2573.8 bits: 484.2 E(85289): 1.3e-136
Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
250 260 270 280 290
>>NP_001014765 (OMIM: 609111) F-box only protein 44 isof (255 aa)
initn: 1397 init1: 1346 opt: 1352 Z-score: 1687.3 bits: 320.0 E(85289): 3e-87
Smith-Waterman score: 1352; 75.1% identity (87.4% similar) in 253 aa overlap (9-261:2-254)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
:. .::::::::::::::::::::::::::::::::::::::.:::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
:::::.:::::::::::::::::::::::.:::::: . :..: ::::.::::.: .
NP_001 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
.::. .::::::::: :::::.::: ::::::::.:: :::: :::::::: :::
NP_001 RKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::: ::: :. . :..:.: :.:::: ..: : :::.:::.:: ::::: ::::: ::.
NP_001 YQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWREVSHTFSNYPPGVRYIWFQHGGVDTH
180 190 200 210 220 230
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::...: .
NP_001 YWAGWYGPRVTNSSITIGPPLP
240 250
>>NP_001291720 (OMIM: 609111) F-box only protein 44 isof (255 aa)
initn: 1397 init1: 1346 opt: 1352 Z-score: 1687.3 bits: 320.0 E(85289): 3e-87
Smith-Waterman score: 1352; 75.1% identity (87.4% similar) in 253 aa overlap (9-261:2-254)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
:. .::::::::::::::::::::::::::::::::::::::.:::::::::
NP_001 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
:::::.:::::::::::::::::::::::.:::::: . :..: ::::.::::.: .
NP_001 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
.::. .::::::::: :::::.::: ::::::::.:: :::: :::::::: :::
NP_001 RKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::: ::: :. . :..:.: :.:::: ..: : :::.:::.:: ::::: ::::: ::.
NP_001 YQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWREVSHTFSNYPPGVRYIWFQHGGVDTH
180 190 200 210 220 230
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::...: .
NP_001 YWAGWYGPRVTNSSITIGPPLP
240 250
>>XP_006711108 (OMIM: 609111) PREDICTED: F-box only prot (255 aa)
initn: 1397 init1: 1346 opt: 1352 Z-score: 1687.3 bits: 320.0 E(85289): 3e-87
Smith-Waterman score: 1352; 75.1% identity (87.4% similar) in 253 aa overlap (9-261:2-254)
10 20 30 40 50 60
pF1KE3 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
:. .::::::::::::::::::::::::::::::::::::::.:::::::::
XP_006 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
:::::.:::::::::::::::::::::::.:::::: . :..: ::::.::::.: .
XP_006 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
.::. .::::::::: :::::.::: ::::::::.:: :::: :::::::: :::
XP_006 RKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 YQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYTFSDYPRGVRYILFQHGGRDTQ
::: ::: :. . :..:.: :.:::: ..: : :::.:::.:: ::::: ::::: ::.
XP_006 YQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWREVSHTFSNYPPGVRYIWFQHGGVDTH
180 190 200 210 220 230
250 260 270 280 290
pF1KE3 YWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQEEAAQSPYRAVVQIF
:::::::::::::::...: .
XP_006 YWAGWYGPRVTNSSITIGPPLP
240 250
293 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 19:30:49 2016 done: Sun Nov 6 19:30:50 2016
Total Scan time: 5.460 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]