Result of FASTA (omim) for
pFN21AE3109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3109, 278 aa
1>>>pF1KE3109 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6450+/-0.000348; mu= 19.0081+/- 0.022
mean_var=76.5444+/-15.629, 0's: 0 Z-trim(116.3): 396 B-trim: 1846 in 2/50
Lambda= 0.146594
statistics sampled from 26871 (27337) to 26871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.321), width: 16
Scan time: 6.480
The best scores are: opt bits E(85289)
NP_001027004 (OMIM: 300405) ras-related protein Ra ( 278) 1641 356.2 3.9e-98
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 509 116.7 3.6e-26
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 503 115.4 8.9e-26
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 503 115.4 9.1e-26
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 497 114.1 2.1e-25
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 493 113.3 3.9e-25
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 482 111.0 1.9e-24
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 471 108.6 9.5e-24
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 455 105.2 9.9e-23
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 451 104.4 1.9e-22
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 450 104.2 2.2e-22
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 428 99.6 5.9e-21
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 418 97.5 2.7e-20
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 416 97.0 3.3e-20
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 416 97.1 3.3e-20
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 415 96.8 3.7e-20
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 415 96.8 3.7e-20
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 410 95.8 7.7e-20
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 409 95.6 9e-20
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237) 402 94.1 2.6e-19
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 399 93.4 3.9e-19
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 399 93.4 3.9e-19
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 397 93.0 5.1e-19
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 395 92.5 6.4e-19
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 395 92.6 7.1e-19
NP_057238 (OMIM: 612945) ras-related protein Rab-4 ( 213) 392 91.9 1.1e-18
NP_001193765 (OMIM: 605570) ras-related protein Ra ( 155) 389 91.2 1.3e-18
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 389 91.3 1.7e-18
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190) 387 90.8 2e-18
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 387 90.9 2.1e-18
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 387 90.9 2.1e-18
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 387 90.9 2.1e-18
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 387 90.9 2.1e-18
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 385 90.5 3e-18
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216) 381 89.6 5.4e-18
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218) 381 89.6 5.4e-18
XP_006722363 (OMIM: 616448) PREDICTED: ras-related ( 212) 373 87.9 1.7e-17
NP_065120 (OMIM: 612942) ras-related protein Rab-2 ( 213) 371 87.5 2.3e-17
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208) 367 86.6 4.1e-17
NP_001161078 (OMIM: 604199) ras-related protein Ra ( 152) 365 86.1 4.4e-17
XP_011520750 (OMIM: 605455) PREDICTED: ras-related ( 231) 366 86.5 5.1e-17
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 362 85.6 8.4e-17
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 360 85.2 1.1e-16
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208) 357 84.5 1.8e-16
NP_112586 (OMIM: 605950,615222) ras-related protei ( 229) 357 84.6 1.9e-16
XP_011530601 (OMIM: 605950,615222) PREDICTED: ras- ( 277) 357 84.7 2.1e-16
NP_741995 (OMIM: 300774) ras-related protein Rab-3 ( 213) 350 83.1 5e-16
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 352 83.9 6.6e-16
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 352 83.9 6.6e-16
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731) 352 84.1 8.6e-16
>>NP_001027004 (OMIM: 300405) ras-related protein Rab-40 (278 aa)
initn: 1641 init1: 1641 opt: 1641 Z-score: 1882.9 bits: 356.2 E(85289): 3.9e-98
Smith-Waterman score: 1641; 88.8% identity (95.3% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
::: ::: .::::::::::::: ::::.::: :::::.:::::.: .:::::::::::::
NP_001 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP
.::::.::::::::::::::::::::::::::::::::::::.:.:::::.:.:::::::
NP_001 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM
::::::::::::::::: ::::::::::::::::::::::::: :::::::::::::: .
NP_001 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS
. : ::::::::::::::..::::::::::::::::::::::::::::.:::::::.: :
NP_001 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS
190 200 210 220 230 240
250 260 270
pF1KE3 YSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS
:::::::::::::: :::.: :::::::::::::::::
NP_001 YSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCKIS
250 260 270
>>NP_002861 (OMIM: 602672) ras-related protein Rab-13 is (203 aa)
initn: 506 init1: 350 opt: 509 Z-score: 590.7 bits: 116.7 E(85289): 3.6e-26
Smith-Waterman score: 509; 44.6% identity (72.0% similar) in 175 aa overlap (9-182:3-177)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
.::: :.:.::.::: ::: .. . . .. : :::.: :. ..:
NP_002 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAP-GV
...:::.:::.:: :: :: .: :::.:.::::::... ::..:. :.: : :.: ::
NP_002 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
..:.::. . ::.: :::. :.. :. :::.: ..:. :.:. ::: .::. :
NP_002 ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
:
NP_002 GRRSGNGNKPPSTDLKTCDKKNTNKCSLG
180 190 200
>>NP_005361 (OMIM: 165040) ras-related protein Rab-8A [H (207 aa)
initn: 499 init1: 394 opt: 503 Z-score: 583.8 bits: 115.4 E(85289): 8.9e-26
Smith-Waterman score: 503; 45.7% identity (72.0% similar) in 175 aa overlap (9-182:3-175)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
..::.:.:.::.::: ::: .: ... : .: . :::.: :: :::
NP_005 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-V
.:.:::.:::.:: :: :: .: :::.:..:::::.:. :::.: ::..:.::: . :
NP_005 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
:...::. . :::: :... : :. :.:.: :.:. ..: ::: . .
NP_005 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI--KAK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
::.
NP_005 MDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL
180 190 200
>>XP_011526322 (OMIM: 165040) PREDICTED: ras-related pro (215 aa)
initn: 499 init1: 394 opt: 503 Z-score: 583.6 bits: 115.4 E(85289): 9.1e-26
Smith-Waterman score: 503; 45.7% identity (72.0% similar) in 175 aa overlap (9-182:3-175)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
..::.:.:.::.::: ::: .: ... : .: . :::.: :: :::
XP_011 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-V
.:.:::.:::.:: :: :: .: :::.:..:::::.:. :::.: ::..:.::: . :
XP_011 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
:...::. . :::: :... : :. :.:.: :.:. ..: ::: . .
XP_011 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI--KAK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
::.
XP_011 MDKKLGQKDNMVCKDREPWLGEKLPRSLGQGQGWCLITAGSSS
180 190 200 210
>>NP_057215 (OMIM: 612672) ras-related protein Rab-10 [H (200 aa)
initn: 482 init1: 386 opt: 497 Z-score: 577.1 bits: 114.1 E(85289): 2.1e-25
Smith-Waterman score: 497; 45.2% identity (73.8% similar) in 168 aa overlap (9-175:4-171)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
..::.:.:.::.::: ::: .: ..: : .. . :::.: :. :.:
NP_057 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA-PGV
...:::.:::.:: :: :: :: :::.:..:::::.: ::..:..:...::::: :
NP_057 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
..:.::. . :: :: ... :.. :. :::.: :.:: ..: ::. .:
NP_057 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
NP_057 VKEPNSENVDISSGGGVTGWKSKCC
180 190 200
>>NP_057614 (OMIM: 613532) ras-related protein Rab-8B [H (207 aa)
initn: 480 init1: 386 opt: 493 Z-score: 572.3 bits: 113.3 E(85289): 3.9e-25
Smith-Waterman score: 493; 44.1% identity (72.4% similar) in 170 aa overlap (9-177:3-172)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
..::.:.:.::.::: ::: .: ... : .. . :::.: :: :::
NP_057 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-V
...:::.:::.:: :: :: .: :::.:..:::::.:. :::.: ::..:.::: . :
NP_057 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
....::. . :::: :... : :. :.:.: . :. :.: ::: .. .
NP_057 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
NP_057 RKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
180 190 200
>>NP_004152 (OMIM: 179508) ras-related protein Rab-1A is (205 aa)
initn: 499 init1: 370 opt: 482 Z-score: 559.8 bits: 111.0 E(85289): 1.9e-24
Smith-Waterman score: 482; 43.5% identity (69.4% similar) in 170 aa overlap (11-179:8-177)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
::.:.:.::.::: :::. .: . : . : :.:.: :: :::
NP_004 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAP-GV
. .:::.:::.:: :: :: :: :::.:.:.:::.... ::... .:..:::..: .:
NP_004 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
:.::::. :. :. : :. .:. ::. :.:.: :. .:: .: . : :
NP_004 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
NP_004 PGATAGGAEKSNVKIQSTPVKQSGGGCC
180 190 200
>>NP_112243 (OMIM: 612565) ras-related protein Rab-1B [H (201 aa)
initn: 470 init1: 362 opt: 471 Z-score: 547.3 bits: 108.6 E(85289): 9.5e-24
Smith-Waterman score: 471; 42.4% identity (69.4% similar) in 170 aa overlap (11-179:5-174)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
::.:.:.::.::: :::. .: . : . : :.:.: :: :::
NP_112 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAP-GV
. .:::.:::.:: :: :: :: :::.:.:.:::.... :. .. .:..:::..: .:
NP_112 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHG
:.::::. :. :. : . :. .:. ::. :.:.: :. ..: .: . : :
NP_112 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 MDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGG
NP_112 PGAASGGERPNLKIDSTPVKPAGGGCC
180 190 200
>>NP_006852 (OMIM: 604199) ras-related protein Rab-35 is (201 aa)
initn: 453 init1: 453 opt: 455 Z-score: 529.1 bits: 105.2 E(85289): 9.9e-23
Smith-Waterman score: 455; 40.0% identity (69.4% similar) in 180 aa overlap (9-188:3-181)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
: :: :.:.:..::: :::. .: . :.. . : :.:.: :. ..:
NP_006 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP
..::::.:::.:: :: :: .: ::..:::.:::... :: .. ::..::... :
NP_006 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM
.:::::. .. : ::.: .: ..:. .::.: : :. : :. ....:: :
NP_006 RILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL-RAKK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS
: : . ..
NP_006 DNLAKQQQQQQNDVVKLTKNSKRKKRCC
180 190 200
>>NP_004654 (OMIM: 605570) ras-related protein Rab-11A i (216 aa)
initn: 439 init1: 317 opt: 451 Z-score: 524.1 bits: 104.4 E(85289): 1.9e-22
Smith-Waterman score: 451; 38.6% identity (69.6% similar) in 184 aa overlap (4-182:1-184)
10 20 30 40 50 60
pF1KE3 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG
.:. ::.:.: .:.::: :::...:. . . . :... : .: .::
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
10 20 30 40 50
70 80 90 100 110
pF1KE3 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPG-V
. .: :.:::.:: :. .: .: ::: :..::::::.. ......::.::. .:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESF----TELARIVL
.::::. : : :::..:.:.::. :..:.:.: : . :. .: ::. :::
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 LRHGMDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARM
.. ::
NP_004 QKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI
180 190 200 210
278 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:44:47 2016 done: Sun Nov 6 13:44:48 2016
Total Scan time: 6.480 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]