Result of FASTA (ccds) for
pFN21AE3108
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3108, 277 aa
1>>>pF1KE3108 277 - 277 aa - 277 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4484+/-0.000738; mu= 14.4007+/- 0.045
mean_var=65.5677+/-13.169, 0's: 0 Z-trim(108.3): 9 B-trim: 0 in 0/50
Lambda= 0.158391
statistics sampled from 10142 (10150) to 10142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.312), width: 16
Scan time: 2.220
The best scores are: opt bits E(32554)
CCDS6944.1 UCK1 gene_id:83549|Hs108|chr9 ( 277) 1856 432.6 1.5e-121
CCDS59152.1 UCK1 gene_id:83549|Hs108|chr9 ( 282) 1773 413.6 7.9e-116
CCDS59151.1 UCK1 gene_id:83549|Hs108|chr9 ( 268) 1604 375.0 3.2e-104
CCDS1252.1 UCK2 gene_id:7371|Hs108|chr1 ( 261) 1191 280.6 8e-76
CCDS48046.1 UCK1 gene_id:83549|Hs108|chr9 ( 201) 1115 263.2 1.1e-70
CCDS54479.1 UCKL1 gene_id:54963|Hs108|chr20 ( 533) 694 167.2 2.3e-41
CCDS13547.1 UCKL1 gene_id:54963|Hs108|chr20 ( 548) 694 167.2 2.3e-41
>>CCDS6944.1 UCK1 gene_id:83549|Hs108|chr9 (277 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 2295.6 bits: 432.6 E(32554): 1.5e-121
Smith-Waterman score: 1856; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR
190 200 210 220 230 240
250 260 270
pF1KE3 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
:::::::::::::::::::::::::::::::::::::
CCDS69 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
250 260 270
>>CCDS59152.1 UCK1 gene_id:83549|Hs108|chr9 (282 aa)
initn: 1789 init1: 1606 opt: 1773 Z-score: 2192.9 bits: 413.6 E(32554): 7.9e-116
Smith-Waterman score: 1773; 95.4% identity (96.5% similar) in 282 aa overlap (1-277:1-282)
10 20 30 40 50
pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIG---VSGGTA--SGKSTVCEKIMELLGQNEVEQR
::::::::::::::::::::::::::: ..: .:::::::::::::::::::
CCDS59 MASAGGEDCESPAPEADRPHQRPFLIGDERFQAGIPLLCLQSTVCEKIMELLGQNEVEQR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 QRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 DFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 RGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
190 200 210 220 230 240
240 250 260 270
pF1KE3 CKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
::::::::::::::::::::::::::::::::::::::::::
CCDS59 CKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
250 260 270 280
>>CCDS59151.1 UCK1 gene_id:83549|Hs108|chr9 (268 aa)
initn: 1787 init1: 1604 opt: 1604 Z-score: 1984.6 bits: 375.0 E(32554): 3.2e-104
Smith-Waterman score: 1773; 96.8% identity (96.8% similar) in 277 aa overlap (1-277:1-268)
10 20 30 40 50 60
pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV
::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS59 MASAGGEDCESPAPEADRPHQRPFLIG---------STVCEKIMELLGQNEVEQRQRKVV
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR
180 190 200 210 220 230
250 260 270
pF1KE3 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
:::::::::::::::::::::::::::::::::::::
CCDS59 GGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
240 250 260
>>CCDS1252.1 UCK2 gene_id:7371|Hs108|chr1 (261 aa)
initn: 1208 init1: 808 opt: 1191 Z-score: 1474.7 bits: 280.6 E(32554): 8e-76
Smith-Waterman score: 1195; 69.5% identity (85.3% similar) in 272 aa overlap (8-277:4-261)
10 20 30 40 50
pF1KE3 MASAGGEDCESPAPEADRPHQ-RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKV
: :. . ..:. .:::::::::::::::.:: ::..:::::::. ::..:
CCDS12 MAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 VILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVT
:::::: ::.:::.::::::::::.::::::::::.:. .:::.:.:::::..:.::::.
CCDS12 VILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 HSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGR
::: ::..:::::::::::::.:::::.::.:...::::::.:.:::::::::. .:::
CCDS12 HSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 DLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKW
::::::.:: :::::::::::::::::::::::::.::.::::::::::::::::
CCDS12 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG-----
180 190 200 210 220 230
240 250 260 270
pF1KE3 HRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
: : ..: : :. : ::. :::::::
CCDS12 ------GPSKRQT---NGCLNGYTPSRKRQASESSSRPH
240 250 260
>>CCDS48046.1 UCK1 gene_id:83549|Hs108|chr9 (201 aa)
initn: 1115 init1: 1115 opt: 1115 Z-score: 1382.6 bits: 263.2 E(32554): 1.1e-70
Smith-Waterman score: 1115; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRDKEVCRCDHPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR
CCDS48 RSGQYGCHQPDRAAHPGHSEW
190 200
>>CCDS54479.1 UCKL1 gene_id:54963|Hs108|chr20 (533 aa)
initn: 700 init1: 426 opt: 694 Z-score: 856.1 bits: 167.2 E(32554): 2.3e-41
Smith-Waterman score: 694; 49.1% identity (78.3% similar) in 212 aa overlap (21-231:81-285)
10 20 30 40 50
pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQN
.. : ::..::.::::.:: . :.: :
CCDS54 KSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEAL---
60 70 80 90 100
60 70 80 90 100 110
pF1KE3 EVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTV
.: ::.::.: :::::: .:. .: ....::::::::: ::. :::.. .::.:
CCDS54 DVPW----VVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAFDFDLIISTLKKLKQGKSV
110 120 130 140 150 160
120 130 140 150 160 170
pF1KE3 EVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRV
.:: :::.:::: . ..: :.:..::::..: .. . ... ...:::::::.:: ::.
CCDS54 KVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRL
170 180 190 200 210 220
180 190 200 210 220
pF1KE3 LRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQD
::. .::::.: .. ::. ::::.:... :: . ::...::: : :::.:::::...
CCDS54 RRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVPRGSGNTVAIDLIVQHVHS
230 240 250 260 270 280
230 240 250 260 270
pF1KE3 ILNGDICKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
:
CCDS54 QLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSKRLM
290 300 310 320 330 340
>>CCDS13547.1 UCKL1 gene_id:54963|Hs108|chr20 (548 aa)
initn: 700 init1: 426 opt: 694 Z-score: 855.9 bits: 167.2 E(32554): 2.3e-41
Smith-Waterman score: 694; 49.1% identity (78.3% similar) in 212 aa overlap (21-231:96-300)
10 20 30 40 50
pF1KE3 MASAGGEDCESPAPEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQN
.. : ::..::.::::.:: . :.: :
CCDS13 KSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEAL---
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE3 EVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTV
.: ::.::.: :::::: .:. .: ....::::::::: ::. :::.. .::.:
CCDS13 DVPW----VVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAFDFDLIISTLKKLKQGKSV
130 140 150 160 170
120 130 140 150 160 170
pF1KE3 EVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRV
.:: :::.:::: . ..: :.:..::::..: .. . ... ...:::::::.:: ::.
CCDS13 KVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRL
180 190 200 210 220 230
180 190 200 210 220
pF1KE3 LRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQD
::. .::::.: .. ::. ::::.:... :: . ::...::: : :::.:::::...
CCDS13 RRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADIVVPRGSGNTVAIDLIVQHVHS
240 250 260 270 280 290
230 240 250 260 270
pF1KE3 ILNGDICKWHRGGSNGRSYKRTFSEPGDHPGMLTSGKRSHLESSSRPH
:
CCDS13 QLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHTIIRDKETSRDEFIFYSKRLM
300 310 320 330 340 350
277 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:39:40 2016 done: Sun Nov 6 15:39:41 2016
Total Scan time: 2.220 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]