FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3102, 269 aa
  1>>>pF1KE3102 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2168+/-0.000731; mu= 16.2936+/- 0.044
 mean_var=73.4575+/-15.091, 0's: 0 Z-trim(110.0): 14  B-trim: 636 in 1/50
 Lambda= 0.149643
 statistics sampled from 11304 (11313) to 11304 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.348), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS65554.1 TM2D1 gene_id:83941|Hs108|chr1         ( 207) 1418 314.7 3.3e-86
CCDS10392.1 TM2D3 gene_id:80213|Hs108|chr15        ( 221)  260 64.8 6.2e-11
CCDS10393.1 TM2D3 gene_id:80213|Hs108|chr15        ( 247)  260 64.8 6.8e-11


>>CCDS65554.1 TM2D1 gene_id:83941|Hs108|chr1              (207 aa)
 initn: 1418 init1: 1418 opt: 1418  Z-score: 1661.2  bits: 314.7 E(32554): 3.3e-86
Smith-Waterman score: 1418; 100.0% identity (100.0% similar) in 207 aa overlap (63-269:1-207)

             40        50        60        70        80        90  
pF1KE3 PFKNLALLPFSLPLLGGGGSGSGEKVSVSKMAAAWPSGPSAPEAVTARLVGVLWFVSVTT
                                     ::::::::::::::::::::::::::::::
CCDS65                               MAAAWPSGPSAPEAVTARLVGVLWFVSVTT
                                             10        20        30

            100       110       120       130       140       150  
pF1KE3 GPWGAVATSAGGEESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTAHVSCFPAPNITC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GPWGAVATSAGGEESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTAHVSCFPAPNITC
               40        50        60        70        80        90

            160       170       180       190       200       210  
pF1KE3 KDSSGNETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KDSSGNETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLK
              100       110       120       130       140       150

            220       230       240       250       260         
pF1KE3 FCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP
              160       170       180       190       200       

>>CCDS10392.1 TM2D3 gene_id:80213|Hs108|chr15             (221 aa)
 initn: 244 init1: 223 opt: 260  Z-score: 309.7  bits: 64.8 E(32554): 6.2e-11
Smith-Waterman score: 260; 45.7% identity (66.4% similar) in 116 aa overlap (135-244:112-221)

          110       120       130       140             150        
pF1KE3 EESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTA--HVSC----FPAPNITCKDSSGN
                                     ::: :.   :::    .:: : : .:    
CCDS10 CVDQDFKSQKNFIINMTCRFCWQLPETDYECTNSTSCMTVSCPRQRYPA-NCTVRD----
              90       100       110       120       130           

      160       170       180       190       200       210        
pF1KE3 ETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLKFCTVGF
       ..:  ::.. : : . :  ..::....:.:::. :: .::::::::    :: :. . : 
CCDS10 HVHCLGNRT-FPKMLYCNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKLFSFGG
        140        150       160       170       180       190     

      220       230       240       250       260         
pF1KE3 CGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP
        :: .::: .::..  :::.::: ::                         
CCDS10 LGIWTLIDVLLIGVGYVGPADGSLYI                         
         200       210       220                          

>>CCDS10393.1 TM2D3 gene_id:80213|Hs108|chr15             (247 aa)
 initn: 244 init1: 223 opt: 260  Z-score: 309.1  bits: 64.8 E(32554): 6.8e-11
Smith-Waterman score: 260; 45.7% identity (66.4% similar) in 116 aa overlap (135-244:138-247)

          110       120       130       140             150        
pF1KE3 EESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTA--HVSC----FPAPNITCKDSSGN
                                     ::: :.   :::    .:: : : .:    
CCDS10 CVDQDFKSQKNFIINMTCRFCWQLPETDYECTNSTSCMTVSCPRQRYPA-NCTVRD----
       110       120       130       140       150        160      

      160       170       180       190       200       210        
pF1KE3 ETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLKFCTVGF
       ..:  ::.. : : . :  ..::....:.:::. :: .::::::::    :: :. . : 
CCDS10 HVHCLGNRT-FPKMLYCNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKLFSFGG
            170        180       190       200       210       220 

      220       230       240       250       260         
pF1KE3 CGIGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRLSITNETFRKTQLYP
        :: .::: .::..  :::.::: ::                         
CCDS10 LGIWTLIDVLLIGVGYVGPADGSLYI                         
             230       240                                




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:50:34 2016 done: Sun Nov  6 04:50:34 2016
 Total Scan time:  2.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]