FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3101, 267 aa
  1>>>pF1KE3101 267 - 267 aa - 267 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8902+/-0.000702; mu= 12.7156+/- 0.042
 mean_var=86.6603+/-16.938, 0's: 0 Z-trim(111.8): 15  B-trim: 46 in 1/50
 Lambda= 0.137773
 statistics sampled from 12693 (12706) to 12693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.39), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS6476.1 CER1 gene_id:9350|Hs108|chr9            ( 267) 1840 375.0 3.1e-104


>>CCDS6476.1 CER1 gene_id:9350|Hs108|chr9                 (267 aa)
 initn: 1840 init1: 1840 opt: 1840  Z-score: 1984.9  bits: 375.0 E(32554): 3.1e-104
Smith-Waterman score: 1840; 98.5% identity (99.6% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KE3 MHLLLFQLLVLLPLGKTTWHQDGRQNQSSLSPVLLPRNQRELPTGNHEEAEEKPDLLVAV
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::.:::
CCDS64 MHLLLFQLLVLLPLGKTTRHQDGRQNQSSLSPVLLPRNQRELPTGNHEEAEEKPDLFVAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PHLVGTSPAGEGQRQREKMLSRFGRFWKKPEREMHPSRDSDSEPFPPGTQSLIQPIDGMK
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PHLVATSPAGEGQRQREKMLSRFGRFWKKPEREMHPSRDSDSEPFPPGTQSLIQPIDGMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MEKSPLREEAKKFWHHFMFRKTPASQGVILPIKSHEVHWETCRTVPFSQTITHEGCEKIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS64 MEKSPLREEAKKFWHHFMFRKTPASQGVILPIKSHEVHWETCRTVPFSQTITHEGCEKVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VQNNLCFGKCGSVHFPGAAQHSHTSCSHCLPAKFTTMHLPLNCTELSSVIKVVMLVEECQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VQNNLCFGKCGSVHFPGAAQHSHTSCSHCLPAKFTTMHLPLNCTELSSVIKVVMLVEECQ
              190       200       210       220       230       240

              250       260       
pF1KE3 CKVKTEHEDGHILHAGSQDSFIPGVSA
       :::::::::::::::::::::::::::
CCDS64 CKVKTEHEDGHILHAGSQDSFIPGVSA
              250       260       




267 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:51:47 2016 done: Sun Nov  6 04:51:48 2016
 Total Scan time:  2.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]