Result of FASTA (omim) for
pFN21AE3092
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3092, 262 aa
1>>>pF1KE3092 262 - 262 aa - 262 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7218+/-0.000439; mu= 13.6484+/- 0.027
mean_var=78.1562+/-15.376, 0's: 0 Z-trim(109.9): 23 B-trim: 236 in 2/51
Lambda= 0.145075
statistics sampled from 18166 (18181) to 18166 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.57), E-opt: 0.2 (0.213), width: 16
Scan time: 6.620
The best scores are: opt bits E(85289)
NP_620132 (OMIM: 604602) ribosome-recycling factor ( 262) 1637 352.2 5.5e-97
NP_001333270 (OMIM: 604602) ribosome-recycling fac ( 262) 1637 352.2 5.5e-97
NP_001333268 (OMIM: 604602) ribosome-recycling fac ( 283) 1637 352.2 5.8e-97
XP_011517485 (OMIM: 604602) PREDICTED: ribosome-re ( 283) 1637 352.2 5.8e-97
NP_001333272 (OMIM: 604602) ribosome-recycling fac ( 218) 1337 289.4 3.7e-78
NP_954646 (OMIM: 604602) ribosome-recycling factor ( 201) 1167 253.8 1.8e-67
XP_011517487 (OMIM: 604602) PREDICTED: ribosome-re ( 222) 1167 253.8 1.9e-67
NP_001333276 (OMIM: 604602) ribosome-recycling fac ( 171) 1049 229.1 4.3e-60
NP_001333274 (OMIM: 604602) ribosome-recycling fac ( 200) 978 214.2 1.4e-55
XP_016870775 (OMIM: 604602) PREDICTED: ribosome-re ( 221) 978 214.3 1.6e-55
NP_001166983 (OMIM: 604602) ribosome-recycling fac ( 210) 916 201.3 1.2e-51
>>NP_620132 (OMIM: 604602) ribosome-recycling factor, mi (262 aa)
initn: 1637 init1: 1637 opt: 1637 Z-score: 1862.3 bits: 352.2 E(85289): 5.5e-97
Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
190 200 210 220 230 240
250 260
pF1KE3 MADDTVAELDRHLAVKTKELLG
::::::::::::::::::::::
NP_620 MADDTVAELDRHLAVKTKELLG
250 260
>>NP_001333270 (OMIM: 604602) ribosome-recycling factor, (262 aa)
initn: 1637 init1: 1637 opt: 1637 Z-score: 1862.3 bits: 352.2 E(85289): 5.5e-97
Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
190 200 210 220 230 240
250 260
pF1KE3 MADDTVAELDRHLAVKTKELLG
::::::::::::::::::::::
NP_001 MADDTVAELDRHLAVKTKELLG
250 260
>>NP_001333268 (OMIM: 604602) ribosome-recycling factor, (283 aa)
initn: 1637 init1: 1637 opt: 1637 Z-score: 1861.8 bits: 352.2 E(85289): 5.8e-97
Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:22-283)
10 20 30
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
:::::::::::::::::::::::::::::::::::::::
NP_001 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL
190 200 210 220 230 240
220 230 240 250 260
pF1KE3 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG
:::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG
250 260 270 280
>>XP_011517485 (OMIM: 604602) PREDICTED: ribosome-recycl (283 aa)
initn: 1637 init1: 1637 opt: 1637 Z-score: 1861.8 bits: 352.2 E(85289): 5.8e-97
Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:22-283)
10 20 30
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
:::::::::::::::::::::::::::::::::::::::
XP_011 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL
190 200 210 220 230 240
220 230 240 250 260
pF1KE3 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG
:::::::::::::::::::::::::::::::::::::::::::
XP_011 KKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLAVKTKELLG
250 260 270 280
>>NP_001333272 (OMIM: 604602) ribosome-recycling factor, (218 aa)
initn: 1337 init1: 1337 opt: 1337 Z-score: 1524.1 bits: 289.4 E(85289): 3.7e-78
Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 218 aa overlap (45-262:1-218)
20 30 40 50 60 70
pF1KE3 FRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNI
::::::::::::::::::::::::::::::
NP_001 MAYSAVPVRHFATKKAKAKGKGQSQTRVNI
10 20 30
80 90 100 110 120 130
pF1KE3 NAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQIS
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 QISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 KLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQMADDTVAELDRHLA
160 170 180 190 200 210
260
pF1KE3 VKTKELLG
::::::::
NP_001 VKTKELLG
>>NP_954646 (OMIM: 604602) ribosome-recycling factor, mi (201 aa)
initn: 1245 init1: 1167 opt: 1167 Z-score: 1332.3 bits: 253.8 E(85289): 1.8e-67
Smith-Waterman score: 1167; 98.4% identity (99.5% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
:::: ..
NP_954 PIPQSAKWPMTQWQNWTGIWQ
190 200
>>XP_011517487 (OMIM: 604602) PREDICTED: ribosome-recycl (222 aa)
initn: 1245 init1: 1167 opt: 1167 Z-score: 1331.7 bits: 253.8 E(85289): 1.9e-67
Smith-Waterman score: 1167; 98.4% identity (99.5% similar) in 187 aa overlap (1-187:22-208)
10 20 30
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
:::::::::::::::::::::::::::::::::::::::
XP_011 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL
::::::::::::::::::::::::: ..
XP_011 KAIRESGMNLNPEVEGTLIRVPIPQSAKWPMTQWQNWTGIWQ
190 200 210 220
>>NP_001333276 (OMIM: 604602) ribosome-recycling factor, (171 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1199.9 bits: 229.1 E(85289): 4.3e-60
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 171 aa overlap (92-262:1-171)
70 80 90 100 110 120
pF1KE3 AKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAV
::::::::::::::::::::::::::::::
NP_001 MKSVIEALKDNFNKTLNIRTSPGSLDKIAV
10 20 30
130 140 150 160 170 180
pF1KE3 VTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVP
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE3 IPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQM
100 110 120 130 140 150
250 260
pF1KE3 ADDTVAELDRHLAVKTKELLG
:::::::::::::::::::::
NP_001 ADDTVAELDRHLAVKTKELLG
160 170
>>NP_001333274 (OMIM: 604602) ribosome-recycling factor, (200 aa)
initn: 1045 init1: 967 opt: 978 Z-score: 1118.6 bits: 214.2 E(85289): 1.4e-55
Smith-Waterman score: 978; 94.0% identity (95.8% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
::::::::::::::::::::::::::::::::: . : . :.:
NP_001 VVTADGKLALNQISQISMKSPQLILVNMASFPESNQRAQRNAGETGQTEHQQGQRLFTEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
NP_001 SHQLNEQAEEIQGYSLRGHH
190 200
>>XP_016870775 (OMIM: 604602) PREDICTED: ribosome-recycl (221 aa)
initn: 1045 init1: 967 opt: 978 Z-score: 1117.9 bits: 214.3 E(85289): 1.6e-55
Smith-Waterman score: 978; 94.0% identity (95.8% similar) in 166 aa overlap (1-166:22-187)
10 20 30
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
:::::::::::::::::::::::::::::::::::::::
XP_016 MNLNGRWQGVISGCFQGLSSVMALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHRQYMAYSAVPVRHFATKKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEAL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAI
:::::::::::::::::::::::::::::::::::::::::::::::::::::: . :
XP_016 KDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPESNQRAQ
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 KAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKL
. :.:
XP_016 RNAGETGQTEHQQGQRLFTEGSHQLNEQAEEIQGYSLRGHH
190 200 210 220
262 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:13:27 2016 done: Sun Nov 6 05:13:28 2016
Total Scan time: 6.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]