FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3092, 262 aa
  1>>>pF1KE3092 262 - 262 aa - 262 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0058+/-0.00108; mu= 11.6692+/- 0.065
 mean_var=75.7059+/-14.868, 0's: 0 Z-trim(103.4): 19  B-trim: 84 in 2/48
 Lambda= 0.147404
 statistics sampled from 7366 (7371) to 7366 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.226), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS6840.1 MRRF gene_id:92399|Hs108|chr9           ( 262) 1637 357.6 5.1e-99
CCDS48013.1 MRRF gene_id:92399|Hs108|chr9          ( 201) 1167 257.6   5e-69
CCDS55336.1 MRRF gene_id:92399|Hs108|chr9          ( 210)  916 204.2   6e-53


>>CCDS6840.1 MRRF gene_id:92399|Hs108|chr9                (262 aa)
 initn: 1637 init1: 1637 opt: 1637  Z-score: 1891.1  bits: 357.6 E(32554): 5.1e-99
Smith-Waterman score: 1637; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
              190       200       210       220       230       240

              250       260  
pF1KE3 MADDTVAELDRHLAVKTKELLG
       ::::::::::::::::::::::
CCDS68 MADDTVAELDRHLAVKTKELLG
              250       260  

>>CCDS48013.1 MRRF gene_id:92399|Hs108|chr9               (201 aa)
 initn: 1245 init1: 1167 opt: 1167  Z-score: 1352.8  bits: 257.6 E(32554): 5e-69
Smith-Waterman score: 1167; 98.4% identity (99.5% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
       :::: ..                                                     
CCDS48 PIPQSAKWPMTQWQNWTGIWQ                                       
              190       200                                        

>>CCDS55336.1 MRRF gene_id:92399|Hs108|chr9               (210 aa)
 initn: 916 init1: 916 opt: 916  Z-score: 1064.0  bits: 204.2 E(32554): 6e-53
Smith-Waterman score: 1208; 80.2% identity (80.2% similar) in 262 aa overlap (1-262:1-210)

               10        20        30        40        50        60
pF1KE3 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
       :                                                    :::::::
CCDS55 K----------------------------------------------------GSLDKIA
                                                                   

              130       140       150       160       170       180
pF1KE3 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
       70        80        90       100       110       120        

              190       200       210       220       230       240
pF1KE3 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSEDTIRLIEKQISQ
      130       140       150       160       170       180        

              250       260  
pF1KE3 MADDTVAELDRHLAVKTKELLG
       ::::::::::::::::::::::
CCDS55 MADDTVAELDRHLAVKTKELLG
      190       200       210




262 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:13:27 2016 done: Sun Nov  6 05:13:27 2016
 Total Scan time:  2.220 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]