Result of FASTA (ccds) for
pFN21AE3085
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3085, 250 aa
1>>>pF1KE3085 250 - 250 aa - 250 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5687+/-0.00068; mu= 14.5107+/- 0.041
mean_var=82.5741+/-16.146, 0's: 0 Z-trim(112.0): 19 B-trim: 0 in 0/52
Lambda= 0.141141
statistics sampled from 12835 (12847) to 12835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.395), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS11111.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 250) 1684 351.8 2.6e-97
CCDS42256.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 247) 1661 347.1 6.5e-96
CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 ( 330) 1096 232.1 3.5e-61
CCDS56019.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 205) 928 197.8 4.8e-51
CCDS56018.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 222) 928 197.8 5.1e-51
CCDS73957.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 223) 926 197.4 6.8e-51
CCDS11112.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 234) 832 178.3 4.1e-45
CCDS9509.1 TNFSF13B gene_id:10673|Hs108|chr13 ( 285) 312 72.5 3.6e-13
CCDS45067.1 TNFSF13B gene_id:10673|Hs108|chr13 ( 266) 285 66.9 1.5e-11
>>CCDS11111.1 TNFSF13 gene_id:8741|Hs108|chr17 (250 aa)
initn: 1684 init1: 1684 opt: 1684 Z-score: 1860.6 bits: 351.8 E(32554): 2.6e-97
Smith-Waterman score: 1684; 99.6% identity (100.0% similar) in 250 aa overlap (1-250:1-250)
10 20 30 40 50 60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS11 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
190 200 210 220 230 240
250
pF1KE3 HGTFLGFVKL
::::::::::
CCDS11 HGTFLGFVKL
250
>>CCDS42256.1 TNFSF13 gene_id:8741|Hs108|chr17 (247 aa)
initn: 1678 init1: 1661 opt: 1661 Z-score: 1835.4 bits: 347.1 E(32554): 6.5e-96
Smith-Waterman score: 1661; 99.2% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS42 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
190 200 210 220 230 240
250
pF1KE3 HGTFLGFVKL
::::::.
CCDS42 HGTFLGL
>>CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 (330 aa)
initn: 1096 init1: 1096 opt: 1096 Z-score: 1211.9 bits: 232.1 E(32554): 3.5e-61
Smith-Waterman score: 1096; 99.4% identity (100.0% similar) in 165 aa overlap (86-250:166-330)
60 70 80 90 100 110
pF1KE3 QSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQH
::::::::::.:::::::::::::::::::
CCDS11 ARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERSRKRRAVLTQKQKKQH
140 150 160 170 180 190
120 130 140 150 160 170
pF1KE3 SVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVT
200 210 220 230 240 250
180 190 200 210 220 230
pF1KE3 FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAK
260 270 280 290 300 310
240 250
pF1KE3 LNLSPHGTFLGFVKL
:::::::::::::::
CCDS11 LNLSPHGTFLGFVKL
320 330
>>CCDS56019.1 TNFSF13 gene_id:8741|Hs108|chr17 (205 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1029.9 bits: 197.8 E(32554): 4.8e-51
Smith-Waterman score: 1321; 88.0% identity (88.0% similar) in 233 aa overlap (18-250:1-205)
10 20 30 40 50 60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
:::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
10 20 30 40
70 80 90 100 110 120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
:::::::::::::::::::::::::: ::::::
CCDS56 EVSRLQGTGGPSQNGEGYPWQSLPEQ----------------------------HSVLHL
50 60 70
130 140 150 160 170 180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
140 150 160 170 180 190
250
pF1KE3 HGTFLGFVKL
::::::::::
CCDS56 HGTFLGFVKL
200
>>CCDS56018.1 TNFSF13 gene_id:8741|Hs108|chr17 (222 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1029.4 bits: 197.8 E(32554): 5.1e-51
Smith-Waterman score: 1445; 88.8% identity (88.8% similar) in 250 aa overlap (1-250:1-222)
10 20 30 40 50 60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
:::::::::::::::::::::::::: ::::::
CCDS56 EVSRLQGTGGPSQNGEGYPWQSLPEQ----------------------------HSVLHL
70 80 90
130 140 150 160 170 180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
160 170 180 190 200 210
250
pF1KE3 HGTFLGFVKL
::::::::::
CCDS56 HGTFLGFVKL
220
>>CCDS73957.1 TNFSF13 gene_id:8741|Hs108|chr17 (223 aa)
initn: 926 init1: 926 opt: 926 Z-score: 1027.2 bits: 197.4 E(32554): 6.8e-51
Smith-Waterman score: 1454; 89.2% identity (89.2% similar) in 250 aa overlap (1-250:1-223)
10 20 30 40 50 60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
:::::::::::::::::::::::::: :::::::
CCDS73 EVSRLQGTGGPSQNGEGYPWQSLPEQ---------------------------QHSVLHL
70 80 90
130 140 150 160 170 180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
160 170 180 190 200 210
250
pF1KE3 HGTFLGFVKL
::::::::::
CCDS73 HGTFLGFVKL
220
>>CCDS11112.1 TNFSF13 gene_id:8741|Hs108|chr17 (234 aa)
initn: 828 init1: 828 opt: 832 Z-score: 923.4 bits: 178.3 E(32554): 4.1e-45
Smith-Waterman score: 1535; 92.8% identity (93.6% similar) in 250 aa overlap (1-250:1-234)
10 20 30 40 50 60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
:::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS11 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK--------
70 80 90 100 110
130 140 150 160 170 180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 --------NDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
120 130 140 150 160
190 200 210 220 230 240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
170 180 190 200 210 220
250
pF1KE3 HGTFLGFVKL
::::::::::
CCDS11 HGTFLGFVKL
230
>>CCDS9509.1 TNFSF13B gene_id:10673|Hs108|chr13 (285 aa)
initn: 302 init1: 135 opt: 312 Z-score: 350.0 bits: 72.5 E(32554): 3.6e-13
Smith-Waterman score: 324; 31.8% identity (62.2% similar) in 217 aa overlap (52-250:73-284)
30 40 50 60 70 80
pF1KE3 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
: .: ::: :.. .. :. : : :
CCDS95 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
50 60 70 80 90 100
90 100 110 120 130
pF1KE3 SLPEQS--SDALEAWE--------SGERSRKRRAVLTQKQKKQHSVLHLVPINAT-SKDD
.: : . .:. .: :.. ::..::: .. .. :.:. . : . .
CCDS95 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQK
110 120 130 140 150 160
140 150 160 170 180
pF1KE3 SDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-----
.. : : : ...:: .:. . . ....: ...:.:::. : :..::....:.
CCDS95 GSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVF
170 180 190 200 210 220
190 200 210 220 230 240
pF1KE3 -GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGT
. ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. :
CCDS95 GDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVT
230 240 250 260 270
250
pF1KE3 FLGFVKL
:.: .::
CCDS95 FFGALKLL
280
>>CCDS45067.1 TNFSF13B gene_id:10673|Hs108|chr13 (266 aa)
initn: 319 init1: 135 opt: 285 Z-score: 320.7 bits: 66.9 E(32554): 1.5e-11
Smith-Waterman score: 286; 30.6% identity (58.8% similar) in 216 aa overlap (52-250:73-265)
30 40 50 60 70 80
pF1KE3 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
: .: ::: :.. .. :. : : :
CCDS45 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
50 60 70 80 90 100
90 100 110 120 130
pF1KE3 SLPEQS--SDALEAWE--------SGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDS
.: : . .:. .: :.. ::..::: .. ... .::
CCDS45 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETGSYT---FVP---------
110 120 130 140
140 150 160 170 180
pF1KE3 DVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------
: ...:: .:. . . ....: ...:.:::. : :..::....:.
CCDS45 ------WLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFG
150 160 170 180 190 200
190 200 210 220 230 240
pF1KE3 GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTF
. ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. ::
CCDS45 DELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTF
210 220 230 240 250
250
pF1KE3 LGFVKL
.: .::
CCDS45 FGALKLL
260
250 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:15:39 2016 done: Sun Nov 6 05:15:39 2016
Total Scan time: 2.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]