FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3084, 248 aa
  1>>>pF1KE3084 248 - 248 aa - 248 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2466+/-0.000329; mu= 15.8478+/- 0.020
 mean_var=77.7775+/-15.961, 0's: 0 Z-trim(117.2): 14  B-trim: 2266 in 2/48
 Lambda= 0.145428
 statistics sampled from 28973 (28985) to 28973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.34), width:  16
 Scan time:  6.700

The best scores are:                                      opt bits E(85289)
XP_005256449 (OMIM: 602602) PREDICTED: secreted an ( 248) 1697 364.9 7.2e-101
NP_002995 (OMIM: 602602) secreted and transmembran ( 248) 1697 364.9 7.2e-101
XP_011521890 (OMIM: 602602) PREDICTED: secreted an ( 248) 1697 364.9 7.2e-101


>>XP_005256449 (OMIM: 602602) PREDICTED: secreted and tr  (248 aa)
 initn: 1697 init1: 1697 opt: 1697  Z-score: 1931.9  bits: 364.9 E(85289): 7.2e-101
Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
              190       200       210       220       230       240

               
pF1KE3 LFPYAADP
       ::::::::
XP_005 LFPYAADP
               

>>NP_002995 (OMIM: 602602) secreted and transmembrane pr  (248 aa)
 initn: 1697 init1: 1697 opt: 1697  Z-score: 1931.9  bits: 364.9 E(85289): 7.2e-101
Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
              190       200       210       220       230       240

               
pF1KE3 LFPYAADP
       ::::::::
NP_002 LFPYAADP
               

>>XP_011521890 (OMIM: 602602) PREDICTED: secreted and tr  (248 aa)
 initn: 1697 init1: 1697 opt: 1697  Z-score: 1931.9  bits: 364.9 E(85289): 7.2e-101
Smith-Waterman score: 1697; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KE3 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQTCPLAFPGHVSQALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSHVNIKLRAHGQESAIFNEVAPGYFSRDGWQLQVQGGVAQLVIKGARDSHAGLYMWHLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHQRNNRQVTLEVSGAEPQSAPDTGFWPVPAVVTAVFILLVALVMFAWYRCRCSQQRREK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFFLLEPQMKVAALRAGAQQGLSRASAELWTPDSEPTPRPLALVFKPSPLGALELLSPQP
              190       200       210       220       230       240

               
pF1KE3 LFPYAADP
       ::::::::
XP_011 LFPYAADP
               




248 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:11:32 2016 done: Sun Nov  6 03:11:33 2016
 Total Scan time:  6.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]