FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3064, 219 aa
  1>>>pF1KE3064 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5719+/-0.000666; mu= 14.3059+/- 0.041
 mean_var=81.2220+/-15.975, 0's: 0 Z-trim(112.2): 10  B-trim: 219 in 1/50
 Lambda= 0.142311
 statistics sampled from 12980 (12985) to 12980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.399), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS3856.1 TPPP gene_id:11076|Hs108|chr5           ( 219) 1430 302.2 1.7e-82
CCDS10835.1 TPPP3 gene_id:51673|Hs108|chr16        ( 176)  777 168.1 3.2e-42
CCDS9566.1 TPPP2 gene_id:122664|Hs108|chr14        ( 170)  683 148.8   2e-36


>>CCDS3856.1 TPPP gene_id:11076|Hs108|chr5                (219 aa)
 initn: 1430 init1: 1430 opt: 1430  Z-score: 1594.7  bits: 302.2 E(32554): 1.7e-82
Smith-Waterman score: 1430; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KE3 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF
              130       140       150       160       170       180

              190       200       210         
pF1KE3 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK
       :::::::::::::::::::::::::::::::::::::::
CCDS38 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK
              190       200       210         

>>CCDS10835.1 TPPP3 gene_id:51673|Hs108|chr16             (176 aa)
 initn: 798 init1: 777 opt: 777  Z-score: 871.5  bits: 168.1 E(32554): 3.2e-42
Smith-Waterman score: 777; 64.9% identity (87.4% similar) in 174 aa overlap (43-216:2-175)

             20        30        40        50        60        70  
pF1KE3 RTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMH
                                     ::: ....:::.::.::.::: .:.:.::.
CCDS10                              MAASTDMAGLEESFRKFAIHGDPKASGQEMN
                                            10        20        30 

             80        90       100       110       120       130  
pF1KE3 GKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKS
       ::::.::::::.: ::..:: :::::::::.:::: :.:..:.:..:::::: :::: ::
CCDS10 GKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKS
              40        50        60        70        80        90 

            140       150       160       170       180       190  
pF1KE3 SEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGR
       .:::   . .:. :: :   ::::: .. .:.:::::...::::::::: :::::: :::
CCDS10 KEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFDESGKGKGIAGR
             100       110       120       130       140       150 

            200       210         
pF1KE3 VDLVDESGYVSGYKHAGTYDQKVQGGK
        :..:.:::::.::.::::: ::.   
CCDS10 QDILDDSGYVSAYKNAGTYDAKVKK  
             160       170        

>>CCDS9566.1 TPPP2 gene_id:122664|Hs108|chr14             (170 aa)
 initn: 710 init1: 666 opt: 683  Z-score: 767.4  bits: 148.8 E(32554): 2e-36
Smith-Waterman score: 683; 58.3% identity (87.5% similar) in 168 aa overlap (49-216:3-170)

       20        30        40        50        60        70        
pF1KE3 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHGKNWSK
                                     :  :..:.:::. :.. ..: ::..::.::
CCDS95                             MASEAEKTFHRFAAFGESSSSGTEMNNKNFSK
                                           10        20        30  

       80        90       100       110       120       130        
pF1KE3 LCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVR
       ::::: ..::..:: :::::::::.:.:. :::::.::.::..::..:::: :: .:...
CCDS95 LCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEAVKELGQKRFKGKSPDEVLE
             40        50        60        70        80        90  

      140       150       160       170       180       190        
pF1KE3 EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDE
       ... :.::: :  .:.::: .  .:.:::::.:.::.:::::: :::::: ::: ...:.
CCDS95 NIYGLMEGKDPATTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGKGIAGREEMTDN
            100       110       120       130       140       150  

      200       210         
pF1KE3 SGYVSGYKHAGTYDQKVQGGK
       .::::::: .::::.:..   
CCDS95 TGYVSGYKGSGTYDKKTK   
            160       170   




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:52:19 2016 done: Sun Nov  6 04:52:20 2016
 Total Scan time:  2.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]