FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3061, 216 aa
  1>>>pF1KE3061 216 - 216 aa - 216 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5555+/-0.000615; mu= 14.7373+/- 0.038
 mean_var=90.3214+/-17.932, 0's: 0 Z-trim(113.9): 3  B-trim: 87 in 1/52
 Lambda= 0.134952
 statistics sampled from 14538 (14539) to 14538 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.447), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS3423.1 DCAF16 gene_id:54876|Hs108|chr4         ( 216) 1487 298.3 2.4e-81


>>CCDS3423.1 DCAF16 gene_id:54876|Hs108|chr4              (216 aa)
 initn: 1487 init1: 1487 opt: 1487  Z-score: 1574.0  bits: 298.3 E(32554): 2.4e-81
Smith-Waterman score: 1487; 99.5% identity (99.5% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KE3 MGPRNPSPDHLSESESEEEENISYLNESSGEEWDSSEEEDSMVPNLSPLESLAWQVKCLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGPRNPSPDHLSESESEEEENISYLNESSGEEWDSSEEEDSMVPNLSPLESLAWQVKCLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KYSTTWKPLNPNSWLYHAKLLDPSTPVHILREIGLRLSHCSHCVPKLEPIPEWPPLASCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KYSTTWKPLNPNSWLYHAKLLDPSTPVHILREIGLRLSHCSHCVPKLEPIPEWPPLASCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VPPFQKPLISPSRLSRDHATLNGALQFATKQLSRTLSRATPIPEYLKQIPNSCVSGCCCG
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VPPFQKPLTSPSRLSRDHATLNGALQFATKQLSRTLSRATPIPEYLKQIPNSCVSGCCCG
              130       140       150       160       170       180

              190       200       210      
pF1KE3 WLTKTVKETTRTEPINTTYSYTDFQKAVNKLLTASL
       ::::::::::::::::::::::::::::::::::::
CCDS34 WLTKTVKETTRTEPINTTYSYTDFQKAVNKLLTASL
              190       200       210      




216 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:04:51 2016 done: Sun Nov  6 06:04:52 2016
 Total Scan time:  2.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]