FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3058, 213 aa
  1>>>pF1KE3058 213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2417+/-0.000325; mu= 15.0546+/- 0.020
 mean_var=69.7840+/-13.742, 0's: 0 Z-trim(116.0): 7  B-trim: 71 in 1/52
 Lambda= 0.153531
 statistics sampled from 26844 (26847) to 26844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.315), width:  16
 Scan time:  6.220

The best scores are:                                      opt bits E(85289)
NP_612417 (OMIM: 611784) general transcription fac ( 213) 1408 320.3 1.5e-87


>>NP_612417 (OMIM: 611784) general transcription factor   (213 aa)
 initn: 1408 init1: 1408 opt: 1408  Z-score: 1692.8  bits: 320.3 E(85289): 1.5e-87
Smith-Waterman score: 1408; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE3 MAAAADERSPEDGEDEEEEEQLVLVELSGIIDSDFLSKCENKCKVLGIDTERPILQVDSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAAAADERSPEDGEDEEEEEQLVLVELSGIIDSDFLSKCENKCKVLGIDTERPILQVDSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VFAGEYEDTLGTCVIFEENVEHADTEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 VFAGEYEDTLGTCVIFEENVEHADTEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEENI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGVEWLQIKDNDFSYRPNMICNFLHENEDEEVVASAPDKSLELEEEEIQMNDSSNLSCEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GGVEWLQIKDNDFSYRPNMICNFLHENEDEEVVASAPDKSLELEEEEIQMNDSSNLSCEQ
              130       140       150       160       170       180

              190       200       210   
pF1KE3 EKPMHLEIEDSGPLIDIPSETEGSVFMETQMLP
       :::::::::::::::::::::::::::::::::
NP_612 EKPMHLEIEDSGPLIDIPSETEGSVFMETQMLP
              190       200       210   




213 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:04:23 2016 done: Sun Nov  6 06:04:24 2016
 Total Scan time:  6.220 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]