FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3057, 212 aa
  1>>>pF1KE3057 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4865+/-0.000856; mu= 12.1206+/- 0.052
 mean_var=60.9961+/-11.996, 0's: 0 Z-trim(106.0): 16  B-trim: 0 in 0/50
 Lambda= 0.164219
 statistics sampled from 8710 (8714) to 8710 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS2552.1 DTYMK gene_id:1841|Hs108|chr2           ( 212) 1390 337.7 3.3e-93


>>CCDS2552.1 DTYMK gene_id:1841|Hs108|chr2                (212 aa)
 initn: 1390 init1: 1390 opt: 1390  Z-score: 1786.9  bits: 337.7 E(32554): 3.3e-93
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE3 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDA
              130       140       150       160       170       180

              190       200       210  
pF1KE3 SKSIEAVHEDIRVLSEDAIRTATEKPLGELWK
       ::::::::::::::::::::::::::::::::
CCDS25 SKSIEAVHEDIRVLSEDAIRTATEKPLGELWK
              190       200       210  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:05:24 2016 done: Sun Nov  6 06:05:25 2016
 Total Scan time:  2.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]