Result of FASTA (ccds) for
pFN21AE3055
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3055, 208 aa
1>>>pF1KE3055 208 - 208 aa - 208 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1477+/-0.000933; mu= 8.8222+/- 0.056
mean_var=70.9061+/-14.451, 0's: 0 Z-trim(106.1): 33 B-trim: 271 in 3/48
Lambda= 0.152311
statistics sampled from 8748 (8768) to 8748 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.269), width: 16
Scan time: 1.820
The best scores are: opt bits E(32554)
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 1352 306.1 1e-83
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 383 93.1 1.2e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 380 92.5 1.8e-19
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 378 92.0 2.5e-19
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 376 91.6 3.4e-19
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 368 89.8 1.2e-18
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 361 88.3 3.4e-18
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 360 88.1 3.9e-18
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 357 87.4 6.2e-18
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 357 87.4 6.2e-18
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 355 87.0 8.4e-18
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 349 85.7 2.1e-17
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 345 84.8 3.8e-17
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 345 84.8 3.9e-17
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 342 84.1 6.1e-17
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 340 83.7 8.3e-17
>>CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 (208 aa)
initn: 1352 init1: 1352 opt: 1352 Z-score: 1616.4 bits: 306.1 E(32554): 1e-83
Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF
130 140 150 160 170 180
190 200
pF1KE3 SLTEKLSKQGRPLNDMKQELTTEFRSPR
::::::::::::::::::::::::::::
CCDS34 SLTEKLSKQGRPLNDMKQELTTEFRSPR
190 200
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 340 init1: 340 opt: 383 Z-score: 466.3 bits: 93.1 E(32554): 1.2e-19
Smith-Waterman score: 383; 37.4% identity (70.9% similar) in 182 aa overlap (10-189:10-188)
10 20 30 40 50 60
pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
:::.:. . :: : .. . :...: :: ... .: ..:: :..:
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLD-NRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
.::. .. .:.::. ....:::..::::.:: .. : .:.:. .:: .:.:::. :
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 EALMGLEAEKLSGT--LGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFF
:: . .. :... : ...:.. : :: ::::: :: .. :: ::: .:..:: : : .
CCDS65 EACV-MQEERVGETPLMNADSI-LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSL
120 130 140 150 160 170
180 190 200
pF1KE3 VFSLTEKLSKQGRPLNDMKQELTTEFRSPR
.: :.: ..
CCDS65 STNLQERLRRKE
180
>>CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 (187 aa)
initn: 370 init1: 320 opt: 380 Z-score: 462.8 bits: 92.5 E(32554): 1.8e-19
Smith-Waterman score: 380; 37.2% identity (68.3% similar) in 183 aa overlap (1-183:1-182)
10 20 30 40 50 60
pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
: : .. .:.: ::: .:.. .:. : ::. : . ::: .:. .. :: : ::
CCDS64 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
.:.. . ::.:: . ..::::.::..:: . : ::.:. .:..: ....:...:
CCDS64 DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF
.... . :: . : :. :..: :. :: ::. ..:: :::.::.::: : ..:.
CCDS64 KTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFIN
120 130 140 150 160 170
190 200
pF1KE3 SLTEKLSKQGRPLNDMKQELTTEFRSPR
::
CCDS64 RLTGYLRN
180
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 340 init1: 340 opt: 378 Z-score: 460.3 bits: 92.0 E(32554): 2.5e-19
Smith-Waterman score: 378; 38.9% identity (73.9% similar) in 157 aa overlap (35-189:35-189)
10 20 30 40 50 60
pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ
:...: :: ... .: ..:: :..: .::
CCDS65 PFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM
. .. .:.::. ....:::..::::.:: .. : .:.:. .:: .:.:::. ::: .
CCDS65 EEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GLEAEKLSGT--LGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSL
.. :... : ...:.. : :: ::::: :: .. :: ::: .:..:: : : . .:
CCDS65 -MQEERVGETPLMNADSI-LAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTNL
130 140 150 160 170 180
190 200
pF1KE3 TEKLSKQGRPLNDMKQELTTEFRSPR
:.: ..
CCDS65 QERLRRKE
190
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 347 init1: 347 opt: 376 Z-score: 458.0 bits: 91.6 E(32554): 3.4e-19
Smith-Waterman score: 376; 34.8% identity (67.9% similar) in 184 aa overlap (7-189:5-188)
10 20 30 40 50
pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVN-QESLKLLNKLQTLSIQQCLPHRKN
:. ...:.. . : .: . : ...: ...: :. ... .: .:: :..
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHD
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 FLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEY
: .::. .. .:.::......::::.:: :.:: .. : .:.:. ::: :.: ::..
CCDS65 FEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMND
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 LEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFV
::: . :. : ... : :: ::.:: :: .. :: ::: .:..:: : : :
CCDS65 LEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFS
120 130 140 150 160 170
180 190 200
pF1KE3 FSLTEKLSKQGRPLNDMKQELTTEFRSPR
.: ..: ..
CCDS65 TNLQKRLRRKD
180
>>CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 (195 aa)
initn: 389 init1: 344 opt: 368 Z-score: 448.3 bits: 89.8 E(32554): 1.2e-18
Smith-Waterman score: 368; 35.7% identity (69.2% similar) in 185 aa overlap (11-193:11-192)
10 20 30 40 50 60
pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
::. . . . :: : .. .....: ::.... .: :: :..:
CCDS64 MALLFPLLAALVMTSYSPVGSLGCDLPQ-NHGLLSRNTLVLLHQMRRISPFLCLKDRRDF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
.::. .. .: ::.:....::::::::::::... : .:. . ... :::::..:
CCDS64 RFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHL
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 EA-LMGLEAEKLS-GTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFF
:. :. . .: : :...: : : . ::. :. ::... :: ::: .:..:: . ::.
CCDS64 ETCLLQVVGEGESAGAISSPALTL--RRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFL
120 130 140 150 160 170
180 190 200
pF1KE3 VFSLTEKLSKQGRPLNDMKQELTTEFRSPR
.. :.: .. : :
CCDS64 STNMQERLRSKDRDLGSS
180 190
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 365 init1: 350 opt: 361 Z-score: 440.2 bits: 88.3 E(32554): 3.4e-18
Smith-Waterman score: 361; 38.1% identity (69.7% similar) in 155 aa overlap (35-189:34-188)
10 20 30 40 50 60
pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ
:...: ::... .: .:: :..: .::
CCDS64 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFRIPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM
. .. .:.::......::::.:: :.:: .. : .::.. ::: .:.:::. ::: .
CCDS64 EEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE
:. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: .
CCDS64 IQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTNLQK
130 140 150 160 170 180
190 200
pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR
.: ..
CCDS64 RLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 364 init1: 349 opt: 360 Z-score: 439.0 bits: 88.1 E(32554): 3.9e-18
Smith-Waterman score: 360; 38.7% identity (67.7% similar) in 155 aa overlap (35-189:34-188)
10 20 30 40 50 60
pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ
:...: :: .. .: .:: :..: :::
CCDS65 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFGLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM
. .. .:.:: .....::::.:: :.:: .. : .::.. ::: .:.:::. ::: .
CCDS65 EEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE
:. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: .
CCDS65 IQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQK
130 140 150 160 170 180
190 200
pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR
: ..
CCDS65 ILRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 330 init1: 314 opt: 357 Z-score: 435.4 bits: 87.4 E(32554): 6.2e-18
Smith-Waterman score: 357; 34.2% identity (64.7% similar) in 190 aa overlap (1-189:1-188)
10 20 30 40 50
pF1KE3 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQV-NQESLKLLNKLQTLSIQQCLPHRKN
: . . .::.: .: :: : : ... :...: .. .. .: .:: :..
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLP--QTHSLSNRRTLMIMAQMGRISPFSCLKDRHD
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 FLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEY
: .::. .. .:.::......::::.:: :.:: .. : :.:. .:: .:.:::.
CCDS65 FGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLND
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 LEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFV
::: : :. . : . . : :. ::.:: :: .. :: ::: .:..:: : . .
CCDS65 LEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLS
120 130 140 150 160 170
180 190 200
pF1KE3 FSLTEKLSKQGRPLNDMKQELTTEFRSPR
.: :.: ..
CCDS65 ANLQERLRRKE
180
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 361 init1: 346 opt: 357 Z-score: 435.4 bits: 87.4 E(32554): 6.2e-18
Smith-Waterman score: 357; 37.4% identity (69.0% similar) in 155 aa overlap (35-189:34-188)
10 20 30 40 50 60
pF1KE3 HFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ
:...: :: .. .: .:: :..: .:.
CCDS64 SFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFGFPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALM
. .. .:.::......::::.:: :.:: .. : .::.. ::: .:.:::. ::: .
CCDS64 EEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTE
:. : ... : :. ::.:: :: .. :: ::: .:..:: : : : .: .
CCDS64 IQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQK
130 140 150 160 170 180
190 200
pF1KE3 KLSKQGRPLNDMKQELTTEFRSPR
.: ..
CCDS64 RLRRKD
208 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:21:18 2016 done: Mon Nov 7 03:21:18 2016
Total Scan time: 1.820 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]