Result of FASTA (ccds) for
pFN21AE3050
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3050, 189 aa
1>>>pF1KE3050 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7707+/-0.0009; mu= 10.3051+/- 0.054
mean_var=64.7476+/-13.056, 0's: 0 Z-trim(105.5): 20 B-trim: 0 in 0/48
Lambda= 0.159391
statistics sampled from 8436 (8455) to 8436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.26), width: 16
Scan time: 1.840
The best scores are: opt bits E(32554)
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1229 291.2 2.6e-79
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1177 279.2 1e-75
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1176 279.0 1.2e-75
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1130 268.4 1.8e-72
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1125 267.3 4.1e-72
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1082 257.4 3.8e-69
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1058 251.9 1.8e-67
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1049 249.8 7.4e-67
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 993 236.9 5.5e-63
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 990 236.2 9e-63
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 985 235.1 2e-62
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 984 234.8 2.3e-62
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 977 233.2 7.1e-62
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 708 171.4 3.1e-43
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 360 91.4 4e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 331 84.7 3.7e-17
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1537.5 bits: 291.2 E(32554): 2.6e-79
Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
:::::::::
CCDS65 LQKILRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1177 init1: 1177 opt: 1177 Z-score: 1472.8 bits: 279.2 E(32554): 1e-75
Smith-Waterman score: 1177; 95.8% identity (98.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::.::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
::: :::::
CCDS64 LQKRLRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1176 init1: 1176 opt: 1176 Z-score: 1471.6 bits: 279.0 E(32554): 1.2e-75
Smith-Waterman score: 1176; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.::::::::::::::::::::::::: :.:::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
::: :::::
CCDS64 LQKRLRRKD
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1130 init1: 1130 opt: 1130 Z-score: 1414.4 bits: 268.4 E(32554): 1.8e-72
Smith-Waterman score: 1130; 92.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.:
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.::::::::: ::::::::::::::: :::::::::::::::::::.:::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
:.: :::::
CCDS34 LKKGLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1170 init1: 1125 opt: 1125 Z-score: 1408.2 bits: 267.3 E(32554): 4.1e-72
Smith-Waterman score: 1125; 91.0% identity (97.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.::::::::::::.:::::::::::::::::::.::::.::::::::::::: ::::.::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.::::::: ::::::.::::::::::::::::::::::::::::::.:.:
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE3 LQKILRRKD
.:. ::::.
CCDS64 FQERLRRKE
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1082 init1: 1082 opt: 1082 Z-score: 1354.8 bits: 257.4 E(32554): 3.8e-69
Smith-Waterman score: 1082; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.::: ::::::::.::::..:::::::::::::.::::::...::.:: ::.::::.::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::: ::::.:: ::::::::::::::::::::: ::::::::::::::::::.:::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
::: :::::
CCDS34 LQKGLRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1073 init1: 1058 opt: 1058 Z-score: 1325.0 bits: 251.9 E(32554): 1.8e-67
Smith-Waterman score: 1058; 82.5% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:...:::::::::::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.::::::::::::.:::::::::::::::::::.::::.:...::.:: ::::::::.::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::..::::.:.::::: ::::.::::::::::::::::::::::::::::::::.:.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
::. ::::.
CCDS65 LQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1313.8 bits: 249.8 E(32554): 7.4e-67
Smith-Waterman score: 1049; 83.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::::::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.::::::::::::.:::::::::.:::::::::..:::::...::::: ::.::.:.::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.::::::::::::::.:::::::::: :::::::::::::::::::::::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKILRRKD
::: :::::
CCDS65 LQKRLRRKD
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 1006 init1: 647 opt: 993 Z-score: 1244.2 bits: 236.9 E(32554): 5.5e-63
Smith-Waterman score: 993; 80.4% identity (93.1% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
.::::: ::::::...: :::::::: ::::::.::::::...::.:: ::::::::.::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::: ::. :::::.:::::::::::::::::: :::::::::::::::::::.:.:::
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KE3 LQKILRRKD
::. :: :.
CCDS65 LQESLRSKE
180
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1010 init1: 990 opt: 990 Z-score: 1240.4 bits: 236.2 E(32554): 9e-63
Smith-Waterman score: 990; 79.4% identity (92.1% similar) in 189 aa overlap (1-189:2-190)
10 20 30 40 50
pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF
:: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 GLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNL
:.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.:
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 EACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST
::::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KE3 NLQKILRRKD
:::. ::::.
CCDS65 NLQERLRRKE
190
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:27:06 2016 done: Sun Nov 6 04:27:06 2016
Total Scan time: 1.840 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]