Result of FASTA (ccds) for
pFN21AE3049
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3049, 189 aa
1>>>pF1KE3049 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3268+/-0.000857; mu= 12.7114+/- 0.051
mean_var=60.3871+/-11.981, 0's: 0 Z-trim(105.1): 20 B-trim: 0 in 0/50
Lambda= 0.165045
statistics sampled from 8237 (8254) to 8237 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.254), width: 16
Scan time: 1.890
The best scores are: opt bits E(32554)
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1247 305.2 1.6e-83
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1091 268.0 2.4e-72
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1072 263.5 5.5e-71
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1059 260.4 4.7e-70
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1052 258.8 1.5e-69
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1049 258.0 2.4e-69
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1040 255.9 1.1e-68
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1038 255.4 1.5e-68
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1033 254.2 3.4e-68
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1030 253.5 5.6e-68
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1026 252.6 1.1e-67
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1024 252.1 1.5e-67
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 994 244.9 2.1e-65
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 699 174.7 3.1e-44
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 376 97.8 4.6e-21
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 338 88.7 2.2e-18
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1247 init1: 1247 opt: 1247 Z-score: 1613.1 bits: 305.2 E(32554): 1.6e-83
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
:::::::::
CCDS65 LQKRLRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1091 init1: 1091 opt: 1091 Z-score: 1412.4 bits: 268.0 E(32554): 2.4e-72
Smith-Waterman score: 1091; 84.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
:::::.:.::::::.::: :::::.: :::::.::::::.:::: ::::::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
:::::::::::::::::::::::.::::::::::.:::.::::::.::: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
::..::::::.::::: ::::.:.:::::::::: :::::::::::::::::::.:.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1072 init1: 1072 opt: 1072 Z-score: 1387.9 bits: 263.5 E(32554): 5.5e-71
Smith-Waterman score: 1072; 84.1% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
::: :.:.::..::: :: :::::.: :::::.:::.:.:..:: ::::::::::::::.
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
.::::::::::::::::::::::.:::::::::..:::::...::::: ::.::.::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::::::::.::::::::::.:.:::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
:::::::::
CCDS64 LQKRLRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1059 init1: 1059 opt: 1059 Z-score: 1371.2 bits: 260.4 E(32554): 4.7e-70
Smith-Waterman score: 1059; 84.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: ::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
::.:::::.::::::::::::::.:::::::::..:::::...::::: ::.::.::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::::::::.:::::::::: :::::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
:::::::::
CCDS64 LQKRLRRKD
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1104 init1: 1052 opt: 1052 Z-score: 1362.2 bits: 258.8 E(32554): 1.5e-69
Smith-Waterman score: 1052; 83.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
:::::::.:::::::::::::: :.: :::::..:::.::.::::::: ::::::::::.
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
::::::::::::::.:::::::..::::::::::.::.:::: ::.:.: ::.::.::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
:::.::: : ::::::::::::.:::::::::: :::::::::::::::::::.: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1358.3 bits: 258.0 E(32554): 2.4e-69
Smith-Waterman score: 1049; 83.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::::::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
.::::::::::::.:::::::::.:::::::::..:::::...::::: ::.::.:.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.::::::::::::::.:::::::::: :::::::::::::::::::::::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
::: :::::
CCDS65 LQKILRRKD
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1040 init1: 1040 opt: 1040 Z-score: 1346.7 bits: 255.9 E(32554): 1.1e-68
Smith-Waterman score: 1040; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::.::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
:::: :::::::::::::..:::.::::::::::.::::::::::.:::::::::.::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
::: ::::::: ::::::::::.::::::::::: ::::::::::::::::::.:::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
::: :::::
CCDS34 LQKGLRRKD
>>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa)
initn: 1099 init1: 1038 opt: 1038 Z-score: 1344.1 bits: 255.4 E(32554): 1.5e-68
Smith-Waterman score: 1038; 82.5% identity (91.5% similar) in 189 aa overlap (1-189:2-190)
10 20 30 40 50
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDF
:: ::::.::::::::::::::::.: .::::.:::::::.::: :::: ::: :::::
CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 EFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDL
:::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.:::
CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 EACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFST
::::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.::
CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
130 140 150 160 170 180
180
pF1KE3 NLQKRLRRKD
:::.:::::.
CCDS65 NLQERLRRKE
190
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 1092 init1: 1033 opt: 1033 Z-score: 1337.7 bits: 254.2 E(32554): 3.4e-68
Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
:: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: :::::
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
:::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
:::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.:::
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1030 init1: 1030 opt: 1030 Z-score: 1333.9 bits: 253.5 E(32554): 5.6e-68
Smith-Waterman score: 1030; 81.0% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
:: :.:.:...::: :: :::::.: ::::: :::.:.:.::: ::::::::::::.:.
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::: ::::.::::::::::::::::::::::::::::::.:::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE3 LQKRLRRKD
:.: :::::
CCDS34 LKKGLRRKD
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:54:37 2016 done: Sun Nov 6 04:54:37 2016
Total Scan time: 1.890 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]