Result of FASTA (ccds) for
pFN21AE3048
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3048, 189 aa
1>>>pF1KE3048 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3807+/-0.000842; mu= 12.0800+/- 0.050
mean_var=61.0167+/-12.337, 0's: 0 Z-trim(105.9): 28 B-trim: 0 in 0/49
Lambda= 0.164191
statistics sampled from 8667 (8691) to 8667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.267), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1241 302.3 1.2e-82
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1144 279.3 9.7e-76
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1140 278.4 1.9e-75
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1130 276.0 9.6e-75
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1079 263.9 4.2e-71
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1061 259.6 8e-70
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1030 252.3 1.3e-67
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1022 250.4 4.8e-67
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 959 235.5 1.5e-62
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 958 235.2 1.8e-62
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 954 234.3 3.4e-62
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 953 234.1 4e-62
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 951 233.6 5.6e-62
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 685 170.6 5.3e-43
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 355 92.4 1.9e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 330 86.5 1.1e-17
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1241 init1: 1241 opt: 1241 Z-score: 1597.4 bits: 302.3 E(32554): 1.2e-82
Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:::::::::
CCDS34 LKKGLRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1144 init1: 1144 opt: 1144 Z-score: 1473.3 bits: 279.3 E(32554): 9.7e-76
Smith-Waterman score: 1144; 93.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: ::::::.:::::::::::::::::::::: ::::::::::::::: ::::::::.:
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
:::::::::::::::::: ::::::::::::::: :::::::::::::::::::.:::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.: :::::
CCDS64 LQKRLRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1140 init1: 1140 opt: 1140 Z-score: 1468.1 bits: 278.4 E(32554): 1.9e-75
Smith-Waterman score: 1140; 92.1% identity (97.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: ::::::.:::::::::::::::::::::: ::::::::.:::::::::::::::.::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:.:::::.::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
:::::::::::::::::: :::::::::::::::.:.:::::::::::::::::.:::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.: :::::
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1130 init1: 1130 opt: 1130 Z-score: 1455.3 bits: 276.0 E(32554): 9.6e-75
Smith-Waterman score: 1130; 92.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.:
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
::::::::.::::::::: ::::::::::::::: :::::::::::::::::::.:::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.: :::::
CCDS65 LQKILRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1113 init1: 1079 opt: 1079 Z-score: 1390.1 bits: 263.9 E(32554): 4.2e-71
Smith-Waterman score: 1079; 87.8% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.:
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
:::::::::::::::: : ::::.:::::::::: :::::::::::::::::::::.:
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
... ::::.
CCDS64 FQERLRRKE
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1061 init1: 1061 opt: 1061 Z-score: 1367.0 bits: 259.6 E(32554): 8e-70
Smith-Waterman score: 1061; 85.7% identity (93.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: ::::::.:::::::::::::::::::::: ::::::::::::::: :::::::..:
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.:::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::::: ::::: :::::::::::::::: ::::::::::::::::::::::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.:::::::
CCDS34 LQKGLRRKD
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1030 init1: 1030 opt: 1030 Z-score: 1327.3 bits: 252.3 E(32554): 1.3e-67
Smith-Waterman score: 1030; 81.0% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: :.:.:...::: :: :::::.: ::::: :::.:.:.::: ::::::::::::.:.
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
:::::::::::::::::: ::::.::::::::::::::::::::::::::::::.:::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.: :::::
CCDS65 LQKRLRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1039 init1: 1022 opt: 1022 Z-score: 1317.1 bits: 250.4 E(32554): 4.8e-67
Smith-Waterman score: 1022; 79.9% identity (94.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: : :::...::. :::::::::::::::: :::.:...::::::::::::::::.:
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::.:::::::::::::::::::.::::.:...::.:: :::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
::..::::::.::::: : ::.:::::::::::: :::::::::::::::::::::.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.. ::::.
CCDS65 LQERLRRKE
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 974 init1: 959 opt: 959 Z-score: 1236.4 bits: 235.5 E(32554): 1.5e-62
Smith-Waterman score: 959; 77.8% identity (90.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: :.:::...::: :: ::: ::::::::: .::...::::: ::: ::::::::.::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::..:::::::.::::::::::.:::.::.. ::.:. :::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
:::.::: : ::::::: ::::::::::::::: ::::::::::::::::::::: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.. ::::.
CCDS65 LQERLRRKE
>>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa)
initn: 973 init1: 958 opt: 958 Z-score: 1235.2 bits: 235.2 E(32554): 1.8e-62
Smith-Waterman score: 958; 76.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
:: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::.:
CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::. :::::::.::: ::::.:.::::::...::.:: :::::::::::
CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
:::.:: : :::::: : ::::.:::.:::::: :::::::::::::::::::.:.:::
CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
130 140 150 160 170 180
pF1KE3 LKKGLRRKD
:.. ::::.
CCDS65 LQERLRRKE
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:54:04 2016 done: Sun Nov 6 04:54:04 2016
Total Scan time: 1.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]