FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3047, 185 aa
  1>>>pF1KE3047 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0804+/-0.000773; mu= 14.6349+/- 0.047
 mean_var=74.7543+/-15.424, 0's: 0 Z-trim(109.6): 94  B-trim: 742 in 2/49
 Lambda= 0.148339
 statistics sampled from 10870 (10990) to 10870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.338), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS5719.1 IFT22 gene_id:64792|Hs108|chr7          ( 185) 1266 279.6 7.6e-76
CCDS47670.1 IFT22 gene_id:64792|Hs108|chr7         ( 155)  799 179.6 8.1e-46
CCDS47671.1 IFT22 gene_id:64792|Hs108|chr7         ( 108)  729 164.5   2e-41


>>CCDS5719.1 IFT22 gene_id:64792|Hs108|chr7               (185 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1475.1  bits: 279.6 E(32554): 7.6e-76
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KE3 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
              130       140       150       160       170       180

            
pF1KE3 MSIMT
       :::::
CCDS57 MSIMT
            

>>CCDS47670.1 IFT22 gene_id:64792|Hs108|chr7              (155 aa)
 initn: 799 init1: 799 opt: 799  Z-score: 936.0  bits: 179.6 E(32554): 8.1e-46
Smith-Waterman score: 974; 83.8% identity (83.8% similar) in 185 aa overlap (1-185:1-155)

               10        20        30        40        50        60
pF1KE3 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE
       :::::::::::::::::::::::::::::::::::::::                     
CCDS47 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVR---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE3 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ---------FESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
               40        50        60        70        80        90

              130       140       150       160       170       180
pF1KE3 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
              100       110       120       130       140       150

            
pF1KE3 MSIMT
       :::::
CCDS47 MSIMT
            

>>CCDS47671.1 IFT22 gene_id:64792|Hs108|chr7              (108 aa)
 initn: 729 init1: 729 opt: 729  Z-score: 857.2  bits: 164.5 E(32554): 2e-41
Smith-Waterman score: 729; 100.0% identity (100.0% similar) in 108 aa overlap (78-185:1-108)

        50        60        70        80        90       100       
pF1KE3 VTSNNKGTGCEFELWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFV
                                     ::::::::::::::::::::::::::::::
CCDS47                               MKDAHGVVIVFNADIPSHRKEMEMWYSCFV
                                             10        20        30

       110       120       130       140       150       160       
pF1KE3 QQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKS
               40        50        60        70        80        90

       170       180     
pF1KE3 IINSMSESRDREEMSIMT
       ::::::::::::::::::
CCDS47 IINSMSESRDREEMSIMT
              100        




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:22:56 2016 done: Sun Nov  6 02:22:56 2016
 Total Scan time:  1.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]