FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3045, 184 aa
  1>>>pF1KE3045 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8919+/-0.000585; mu= 12.3971+/- 0.036
 mean_var=99.1107+/-19.189, 0's: 0 Z-trim(115.7): 10  B-trim: 6 in 1/53
 Lambda= 0.128829
 statistics sampled from 16282 (16292) to 16282 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.5), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS10029.1 GREM1 gene_id:26585|Hs108|chr15        ( 184) 1275 245.8 1.1e-65
CCDS53927.1 GREM1 gene_id:26585|Hs108|chr15        ( 143)  763 150.6   4e-37
CCDS31070.1 GREM2 gene_id:64388|Hs108|chr1         ( 168)  622 124.4 3.5e-29


>>CCDS10029.1 GREM1 gene_id:26585|Hs108|chr15             (184 aa)
 initn: 1275 init1: 1275 opt: 1275  Z-score: 1292.8  bits: 245.8 E(32554): 1.1e-65
Smith-Waterman score: 1275; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE3 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS
              130       140       150       160       170       180

           
pF1KE3 IDLD
       ::::
CCDS10 IDLD
           

>>CCDS53927.1 GREM1 gene_id:26585|Hs108|chr15             (143 aa)
 initn: 777 init1: 755 opt: 763  Z-score: 780.0  bits: 150.6 E(32554): 4e-37
Smith-Waterman score: 904; 77.7% identity (77.7% similar) in 184 aa overlap (1-184:1-143)

               10        20        30        40        50        60
pF1KE3 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKAQHNDSEQTQSPQQPGSRNRGR
       :::::::::::::::::::::::::::::::::::::::                     
CCDS53 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDKA---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE3 GQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG
                           ::::::::::::::::::::::::::::::::::::::::
CCDS53 --------------------LHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCYG
                          40        50        60        70         

              130       140       150       160       170       180
pF1KE3 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCIS
      80        90       100       110       120       130         

           
pF1KE3 IDLD
       ::::
CCDS53 IDLD
     140   

>>CCDS31070.1 GREM2 gene_id:64388|Hs108|chr1              (168 aa)
 initn: 675 init1: 614 opt: 622  Z-score: 637.4  bits: 124.4 E(32554): 3.5e-29
Smith-Waterman score: 647; 55.5% identity (75.1% similar) in 173 aa overlap (12-183:9-162)

               10        20        30         40        50         
pF1KE3 MSRTAYTVGALLLLLGTLLPAAEGKKKGSQGAIPPPDK-AQHNDSEQTQSPQQPGSRNRG
                  :.:...:. .::..:.   :::: : : .. :.::. :   .       
CCDS31    MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIK-------
                  10        20        30        40        50       

      60        70        80        90       100       110         
pF1KE3 RGQGRGTAMPGEEVLESSQEALHVTERKYLKRDWCKTQPLKQTIHEEGCNSRTIINRFCY
                   ::: :::::: :::::::: ::::::::.::. :::: ::::.:::::
CCDS31 ------------EVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCY
                           60        70        80        90        

     120       130       140       150       160       170         
pF1KE3 GQCNSFYIPRHIRKEEGSFQSCSFCKPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCRCI
       :::::::::::..::: :::::.::::.. :...: :.:: :.:: . :.. .::::::.
CCDS31 GQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCM
      100       110       120       130       140       150        

     180         
pF1KE3 SIDLD     
       :..:      
CCDS31 SVNLSDSDKQ
      160        




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:55:11 2016 done: Sun Nov  6 04:55:11 2016
 Total Scan time:  2.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]