Result of FASTA (ccds) for
pFN21AE3033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3033, 151 aa
1>>>pF1KE3033 151 - 151 aa - 151 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1135+/-0.000568; mu= 12.4087+/- 0.035
mean_var=62.4262+/-12.186, 0's: 0 Z-trim(112.8): 60 B-trim: 0 in 0/51
Lambda= 0.162327
statistics sampled from 13466 (13531) to 13466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.416), width: 16
Scan time: 1.890
The best scores are: opt bits E(32554)
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 1060 255.9 7.9e-69
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 1029 248.7 1.3e-66
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 313 81.0 4.1e-16
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 307 79.6 1.1e-15
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 305 79.1 1.4e-15
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 298 77.5 3.8e-15
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 296 77.0 4.9e-15
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 285 74.4 2.9e-14
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 275 72.1 1.5e-13
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 267 70.2 5.4e-13
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 266 69.9 6.3e-13
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 266 69.9 6.3e-13
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 266 70.0 6.4e-13
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 263 69.3 1.1e-12
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 263 69.3 1.2e-12
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 243 64.6 3.1e-11
CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17 ( 354) 243 64.8 5.5e-11
>>CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 (180 aa)
initn: 1060 init1: 1060 opt: 1060 Z-score: 1349.1 bits: 255.9 E(32554): 7.9e-69
Smith-Waterman score: 1060; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:30-180)
10 20 30
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQ
:::::::::::::::::::::::::::::::
CCDS47 MLSPRGVTRARQLLPLRLWPRRSWGDGSIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
130 140 150 160 170 180
>>CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 (191 aa)
initn: 1046 init1: 1029 opt: 1029 Z-score: 1309.5 bits: 248.7 E(32554): 1.3e-66
Smith-Waterman score: 1029; 100.0% identity (100.0% similar) in 146 aa overlap (6-151:46-191)
10 20 30
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSIT
::::::::::::::::::::::::::::::
CCDS47 LRLWPRRSWGDGSIMASMQTTGRRVEVWFPKRLQKELLALQNDPPPGMTLNEKSVQNSIT
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE3 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
140 150 160 170 180 190
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa)
initn: 292 init1: 126 opt: 313 Z-score: 402.8 bits: 81.0 E(32554): 4.1e-16
Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173)
10 20 30
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV
... ::.:::: . ::::. . . :.
CCDS22 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: :
CCDS22 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
::.:: ..:::::....: ::: :.:..:
CCDS22 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR
150 160 170 180 190 200
>>CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 (201 aa)
initn: 286 init1: 126 opt: 307 Z-score: 395.4 bits: 79.6 E(32554): 1.1e-15
Smith-Waterman score: 307; 41.2% identity (67.2% similar) in 119 aa overlap (1-119:53-167)
10 20 30
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV
... ::.:::: . ::::. . . :.
CCDS26 QRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
..: .: . : ::..::: : : . :: ::: :.: : . : .. :.: :
CCDS26 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNINSQGVI
90 100 110 120 130
100 110 120 130 140 150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
::.:: ..:::::....: ::: :.:..:
CCDS26 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR
140 150 160 170 180 190
>>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa)
initn: 284 init1: 126 opt: 305 Z-score: 393.1 bits: 79.1 E(32554): 1.4e-15
Smith-Waterman score: 305; 40.3% identity (68.1% similar) in 119 aa overlap (1-119:45-159)
10 20 30
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV
... ::.:::: . ::::. . . :.
CCDS26 SSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKG-
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
..: .: . : ::..::: : : . :. .::: :.: : . : .. :.: :
CCDS26 -DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI--YHCNINSQGVI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
::.:: ..:::::....: ::: :.:..:
CCDS26 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR
140 150 160 170 180 190
>>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa)
initn: 269 init1: 126 opt: 298 Z-score: 385.5 bits: 77.5 E(32554): 3.8e-15
Smith-Waterman score: 298; 40.9% identity (68.7% similar) in 115 aa overlap (5-119:16-126)
10 20 30 40
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLY
..:.:::: . ::::. . . :. ..: .: . : ::..:
CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKG--DNIYEWRSTILGPPGSVY
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 EGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVC
:: : : . :. .::: :.: : . : .. :.: :::.:: ..:::::....:
CCDS56 EGGVFFLDITFTPEYPFKPPKVTFRTRIY--HCNINSQGVICLDILKDNWSPALTISKVL
60 70 80 90 100 110
110 120 130 140 150
pF1KE3 LSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
::: :.:..:
CCDS56 LSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
120 130 140 150 160
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 277 init1: 149 opt: 296 Z-score: 383.5 bits: 77.0 E(32554): 4.9e-15
Smith-Waterman score: 296; 37.8% identity (60.8% similar) in 143 aa overlap (6-145:4-141)
10 20 30 40 50 60
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF
::.:::: :: ::: . . : ... .: . . : : . :.: : : .:
CCDS72 MALKRIQKELSDLQRDPPAHCSAG--PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCK
. ::: :.. :: . ::.. ::: :::.:: .:::::.:..: ::: :.: .
CCDS72 PTDYPFKPPKIAFTTKI--YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD-P
60 70 80 90 100 110
130 140 150
pF1KE3 EKRRP--PD-NSFYVRTCNKNPKKTKWWYHDDTC
. : :: ..: .: .... :
CCDS72 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 281 init1: 149 opt: 285 Z-score: 369.6 bits: 74.4 E(32554): 2.9e-14
Smith-Waterman score: 285; 41.5% identity (62.6% similar) in 123 aa overlap (6-128:4-117)
10 20 30 40 50 60
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF
::.:::: :: ::: . . : ... .: . . : . :.: : : ..:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGP--VGDDLFHWQATIMGPNDSPYQGGVFFLTIHF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCK
. ::: :.: :: . ::.. ::: :::.:: .:::::.:..: ::: :.: :
CCDS54 PTDYPFKPPKVAFTTKI--YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL--CD
60 70 80 90 100 110
130 140 150
pF1KE3 EKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
. ::.
CCDS54 PN---PDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 276 init1: 134 opt: 275 Z-score: 356.7 bits: 72.1 E(32554): 1.5e-13
Smith-Waterman score: 275; 35.0% identity (65.7% similar) in 137 aa overlap (5-141:6-136)
10 20 30 40 50
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFK
..::.... ::.::: :.. . .:.: :: . . : :: .: :.:...
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPS--ENNIMQWNAVIFGPEGTPFEDGTFKLVIE
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 FSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSC
:: .:: : : : .. . ::.::..: :::.:: . :::. .:.:. :: :.:.
CCDS41 FSEEYPNKPPTVRFLSKMF--HPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLD--
60 70 80 90 100 110
120 130 140 150
pF1KE3 KEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
. . : :: .. ..: ..
CCDS41 EPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
120 130 140 150
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 264 init1: 148 opt: 267 Z-score: 346.7 bits: 70.2 E(32554): 5.4e-13
Smith-Waterman score: 267; 39.1% identity (60.9% similar) in 128 aa overlap (1-128:1-119)
10 20 30 40 50 60
pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF
: : .: :.::: : ::: . . : ... .: . . : . :.: : : ..:
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAG--PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCK
. ::: :.: :: . ::.. ::: :::.:: .:::::....: ::: :.: :
CCDS36 PTDYPFKPPKVAFTTRIY--HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL--CD
60 70 80 90 100 110
130 140 150
pF1KE3 EKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
. ::.
CCDS36 PN---PDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
151 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 02:18:26 2016 done: Sun Nov 6 02:18:27 2016
Total Scan time: 1.890 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]