Result of FASTA (ccds) for
pFN21AE3031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3031, 156 aa
1>>>pF1KE3031 156 - 156 aa - 156 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8009+/-0.000888; mu= 13.4569+/- 0.053
mean_var=50.8157+/-10.528, 0's: 0 Z-trim(103.7): 31 B-trim: 473 in 1/47
Lambda= 0.179918
statistics sampled from 7520 (7545) to 7520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.232), width: 16
Scan time: 1.470
The best scores are: opt bits E(32554)
CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14 ( 156) 998 266.8 3.9e-72
CCDS32050.1 CMTM5 gene_id:116173|Hs108|chr14 ( 125) 607 165.2 1.1e-41
CCDS73617.1 CMTM5 gene_id:116173|Hs108|chr14 ( 223) 603 164.3 3.9e-41
CCDS73618.1 CMTM5 gene_id:116173|Hs108|chr14 ( 105) 400 111.5 1.5e-25
CCDS10815.1 CMTM3 gene_id:123920|Hs108|chr16 ( 182) 336 95.0 2.4e-20
CCDS73619.1 CMTM5 gene_id:116173|Hs108|chr14 ( 74) 278 79.7 3.7e-16
CCDS14319.1 PLP2 gene_id:5355|Hs108|chrX ( 152) 255 73.9 4.3e-14
>>CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14 (156 aa)
initn: 998 init1: 998 opt: 998 Z-score: 1408.5 bits: 266.8 E(32554): 3.9e-72
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSRDGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSRDGAA
70 80 90 100 110 120
130 140 150
pF1KE3 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
::::::::::::::::::::::::::::::::::::
CCDS95 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
130 140 150
>>CCDS32050.1 CMTM5 gene_id:116173|Hs108|chr14 (125 aa)
initn: 607 init1: 607 opt: 607 Z-score: 861.5 bits: 165.2 E(32554): 1.1e-41
Smith-Waterman score: 738; 80.1% identity (80.1% similar) in 156 aa overlap (1-156:1-125)
10 20 30 40 50 60
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSRDGAA
:::::::::::::::::::::::::::::::::
CCDS32 AAALLEFFITLAFLFLYATQYYQRFDRINWPCL---------------------------
70 80 90
130 140 150
pF1KE3 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
::::::::::::::::::::::::::::::::
CCDS32 ----VFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
100 110 120
>>CCDS73617.1 CMTM5 gene_id:116173|Hs108|chr14 (223 aa)
initn: 984 init1: 603 opt: 603 Z-score: 852.0 bits: 164.3 E(32554): 3.9e-41
Smith-Waterman score: 629; 64.4% identity (64.4% similar) in 188 aa overlap (1-121:1-188)
10 20 30 40 50 60
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
10 20 30 40 50 60
70 80 90
pF1KE3 AAALLEFFITLAFLFLYATQYYQRFDRINWPCL---------------------------
:::::::::::::::::::::::::::::::::
CCDS73 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLLQGHGQSGGPHPLDLLSHSAKVQPQPW
70 80 90 100 110 120
100 110
pF1KE3 ----------------------------------------DFLRCVSAIIIFLVVSFAAV
::::::::::::::::::::
CCDS73 PGLTPPGWHTPAAVPWVPAPAPGFWSWLLWFICFHSLGSSDFLRCVSAIIIFLVVSFAAV
130 140 150 160 170 180
120 130 140 150
pF1KE3 TSRDGAAIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
::::::::
CCDS73 TSRDGAAIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
190 200 210 220
>>CCDS73618.1 CMTM5 gene_id:116173|Hs108|chr14 (105 aa)
initn: 400 init1: 400 opt: 400 Z-score: 572.3 bits: 111.5 E(32554): 1.5e-25
Smith-Waterman score: 551; 67.3% identity (67.3% similar) in 156 aa overlap (1-156:1-105)
10 20 30 40 50 60
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
::::::::::::::::::::::::::::::::::::::::::
CCDS73 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETEL------------------
10 20 30 40
70 80 90 100 110 120
pF1KE3 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSRDGAA
:::::::::::::::::::::::::::
CCDS73 ---------------------------------DFLRCVSAIIIFLVVSFAAVTSRDGAA
50 60
130 140 150
pF1KE3 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
::::::::::::::::::::::::::::::::::::
CCDS73 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
70 80 90 100
>>CCDS10815.1 CMTM3 gene_id:123920|Hs108|chr16 (182 aa)
initn: 204 init1: 204 opt: 336 Z-score: 478.8 bits: 95.0 E(32554): 2.4e-20
Smith-Waterman score: 336; 42.1% identity (73.6% similar) in 140 aa overlap (17-154:24-162)
10 20 30 40 50
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFT
: :... .::: : :: :: .: .:..: :::..
CCDS10 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 AS-ISAYMAAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAA
:: ::...: ::::...: ::: : : .... . :: .::::::.: .:....:..:
CCDS10 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA
70 80 90 100 110 120
120 130 140 150
pF1KE3 VTSR-DGAAIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
... :::. :: :::.. . .:: : . :. ...: .:::
CCDS10 IAKYSDGASKAAGVFGFFATIVFATDFYLIF-NDVAKFLKQGDSADETTAHKTEEENSDS
130 140 150 160 170
CCDS10 DSD
180
>>CCDS73619.1 CMTM5 gene_id:116173|Hs108|chr14 (74 aa)
initn: 284 init1: 276 opt: 278 Z-score: 403.5 bits: 79.7 E(32554): 3.7e-16
Smith-Waterman score: 301; 47.4% identity (47.4% similar) in 156 aa overlap (1-156:1-74)
10 20 30 40 50 60
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
::::::::::::::::::::::::::::::::::::::::::
CCDS73 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETEL------------------
10 20 30 40
70 80 90 100 110 120
pF1KE3 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSRDGAA
CCDS73 ------------------------------------------------------------
130 140 150
pF1KE3 IAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
::::::::::::::::::::::::::::::::
CCDS73 ----VFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
50 60 70
>>CCDS14319.1 PLP2 gene_id:5355|Hs108|chrX (152 aa)
initn: 225 init1: 202 opt: 255 Z-score: 366.4 bits: 73.9 E(32554): 4.3e-14
Smith-Waterman score: 255; 35.7% identity (73.2% similar) in 112 aa overlap (29-139:19-130)
10 20 30 40 50 60
pF1KE3 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTASISAYM
: ..::::: .:. : :.:.:::.:: .:
CCDS14 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYS
10 20 30 40 50
70 80 90 100 110
pF1KE3 AAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTSR-DGA
. ...:.... :. .: . . .. :::: ::.: . : :..:..:..... : . .
CCDS14 SLSVIEMILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHS
60 70 80 90 100 110
120 130 140 150
pF1KE3 AIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ
:.: :.:.: . .:.:::.
CCDS14 KIVAGVLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV
120 130 140 150
156 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:29:52 2016 done: Sun Nov 6 14:29:52 2016
Total Scan time: 1.470 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]