Result of FASTA (ccds) for
pFN21AE3030
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3030, 156 aa
1>>>pF1KE3030 156 - 156 aa - 156 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9871+/-0.000852; mu= 9.0019+/- 0.051
mean_var=96.5281+/-19.809, 0's: 0 Z-trim(108.7): 114 B-trim: 0 in 0/50
Lambda= 0.130541
statistics sampled from 10282 (10413) to 10282 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.32), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 1124 221.3 1.9e-58
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 1113 219.3 7.8e-58
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 962 190.8 2.8e-49
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 951 188.8 1.2e-48
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 948 188.2 1.7e-48
CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 ( 158) 578 118.5 1.7e-27
CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 ( 227) 578 118.6 2.2e-27
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 554 114.0 4e-26
CCDS58210.1 LMO3 gene_id:55885|Hs108|chr12 ( 167) 469 98.0 2.7e-21
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 440 92.8 2.3e-19
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 440 92.8 2.3e-19
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 440 92.8 2.3e-19
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 430 90.9 8.7e-19
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 406 86.4 2e-17
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 406 86.4 2e-17
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 379 81.3 6.7e-16
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 370 79.6 2e-15
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 370 79.6 2.1e-15
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 367 79.1 3.2e-15
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 367 79.1 3.2e-15
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 367 79.1 3.2e-15
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 365 78.7 4.2e-15
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 358 77.3 9.3e-15
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 349 75.7 3.1e-14
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 349 75.7 3.1e-14
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 349 75.7 3.2e-14
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 349 75.7 3.3e-14
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 347 75.3 3.9e-14
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 347 75.3 4e-14
>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 (156 aa)
initn: 1124 init1: 1124 opt: 1124 Z-score: 1163.0 bits: 221.3 E(32554): 1.9e-58
Smith-Waterman score: 1124; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
70 80 90 100 110 120
130 140 150
pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
::::::::::::::::::::::::::::::::::::
CCDS44 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
130 140 150
>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 (155 aa)
initn: 1113 init1: 1113 opt: 1113 Z-score: 1151.8 bits: 219.3 E(32554): 7.8e-58
Smith-Waterman score: 1113; 99.4% identity (100.0% similar) in 155 aa overlap (2-156:1-155)
10 20 30 40 50 60
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
60 70 80 90 100 110
130 140 150
pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
::::::::::::::::::::::::::::::::::::
CCDS58 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
120 130 140 150
>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 (156 aa)
initn: 1052 init1: 948 opt: 962 Z-score: 998.1 bits: 190.8 E(32554): 2.8e-49
Smith-Waterman score: 962; 85.3% identity (91.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
:. .: :. :::::: : :::::::::::::::::::::::::::::::::::::::
CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
:::::::::::::::::::::::.::::::::::::::::::::.:::::::::::::::
CCDS58 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
70 80 90 100 110 120
130 140 150
pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
::::::::::::::::::: ::::: .. . ::.
CCDS58 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150
>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 (163 aa)
initn: 1040 init1: 948 opt: 951 Z-score: 986.6 bits: 188.8 E(32554): 1.2e-48
Smith-Waterman score: 951; 88.4% identity (93.2% similar) in 147 aa overlap (10-156:17-163)
10 20 30 40 50
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
. :::::: : ::::::::::::::::::::::::::::::::
CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 CDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDC
::::::::::::::::::::::::::::::.::::::::::::::::::::.::::::::
CCDS58 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
70 80 90 100 110 120
120 130 140 150
pF1KE3 FACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
:::::::::::::::::::::::::: ::::: .. . ::.
CCDS58 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150 160
>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 (145 aa)
initn: 1052 init1: 948 opt: 948 Z-score: 984.3 bits: 188.2 E(32554): 1.7e-48
Smith-Waterman score: 948; 89.7% identity (93.8% similar) in 145 aa overlap (12-156:1-145)
10 20 30 40 50 60
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
:::::: : :::::::::::::::::::::::::::::::::::::::
CCDS86 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40
70 80 90 100 110 120
pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
:::::::::::::::::::::::.::::::::::::::::::::.:::::::::::::::
CCDS86 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
50 60 70 80 90 100
130 140 150
pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
::::::::::::::::::: ::::: .. . ::.
CCDS86 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
110 120 130 140
>>CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 (158 aa)
initn: 653 init1: 565 opt: 578 Z-score: 607.2 bits: 118.5 E(32554): 1.7e-27
Smith-Waterman score: 578; 59.1% identity (81.9% similar) in 127 aa overlap (24-149:30-156)
10 20 30 40 50
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
:.::...: :::.:::.:.:::::::.: :
CCDS44 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 DCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCF
::::::: :: : . ::::::::::: : ::.:.: : :.::.::..:.::::.::
CCDS44 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
70 80 90 100 110 120
120 130 140 150
pF1KE3 ACQLCNQRFCVGDKFFLKNNMILCQMD-YEEGQLNGTFESQVQ
: :...:::::...: :. :.:..: :: ..::
CCDS44 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
130 140 150
>>CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 (227 aa)
initn: 653 init1: 565 opt: 578 Z-score: 605.0 bits: 118.6 E(32554): 2.2e-27
Smith-Waterman score: 578; 59.1% identity (81.9% similar) in 127 aa overlap (24-149:99-225)
10 20 30 40 50
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
:.::...: :::.:::.:.:::::::.:
CCDS78 PMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDL
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE3 CDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDC
: ::::::: :: : . ::::::::::: : ::.:.: : :.::.::..:.::::.:
CCDS78 CGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC
130 140 150 160 170 180
120 130 140 150
pF1KE3 FACQLCNQRFCVGDKFFLKNNMILCQMD-YEEGQLNGTFESQVQ
: : :...:::::...: :. :.:..: :: ..::
CCDS78 FKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
190 200 210 220
>>CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 (165 aa)
initn: 638 init1: 554 opt: 554 Z-score: 582.5 bits: 114.0 E(32554): 4e-26
Smith-Waterman score: 554; 52.3% identity (78.8% similar) in 132 aa overlap (22-153:21-152)
10 20 30 40 50 60
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
: ::::. :: ::.:: :.:.::: ::::.::. .::.
CCDS71 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGD
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
.:.. :::...:::: ::.::::..: :.::.. ::: :.::::. ::::: ::.:. :
CCDS71 IGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCR
60 70 80 90 100 110
130 140 150
pF1KE3 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
.:. ::.: :. ..:. : . .:: ..:
CCDS71 NRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
120 130 140 150 160
>>CCDS58210.1 LMO3 gene_id:55885|Hs108|chr12 (167 aa)
initn: 861 init1: 469 opt: 469 Z-score: 495.9 bits: 98.0 E(32554): 2.7e-21
Smith-Waterman score: 766; 69.0% identity (76.8% similar) in 168 aa overlap (12-156:1-167)
10 20 30 40 50 60
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
:::::: : :::::::::::::::::::::::::::::::::::::::
CCDS58 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40
70 80 90
pF1KE3 ----VGSTLYTKA---NLILCRR----------DYLR------LFGTTGNCAACSKLIPA
:: .: .: .. .: :. . :::.:::::::::::::
CCDS58 HLKRCGS-IYIHAAHTEIGICVTLEWPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPA
50 60 70 80 90 100
100 110 120 130 140 150
pF1KE3 FEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ
:::::::.:::::::::::::::::::::::::::::::::: ::::: .. . ::.
CCDS58 FEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
110 120 130 140 150 160
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 376 init1: 234 opt: 440 Z-score: 461.2 bits: 92.8 E(32554): 2.3e-19
Smith-Waterman score: 440; 45.0% identity (68.2% similar) in 151 aa overlap (6-155:47-190)
10 20 30
pF1KE3 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRY
.. :.: :: :. : ::::. ::.:::
CCDS30 SGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLS--PE-KPALCAGCGGKISDRY
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 LLKALDKYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKL
: :.:: :: :::: :.:.:. : : ..: . : :..:: : : .. :: :
CCDS30 YLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLG
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE3 IPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQ
: : ::::::::.::::.::.:. ::. . .::.: .:.... :. .: :.: . :
CCDS30 ISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET-LLQGEYPPQ
140 150 160 170 180
pF1KE3 VQ
.
CCDS30 LSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQ
190 200 210 220 230 240
156 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:56:52 2016 done: Sun Nov 6 04:56:52 2016
Total Scan time: 1.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]