FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3028, 151 aa
  1>>>pF1KE3028 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5212+/-0.000846; mu= 16.5798+/- 0.051
 mean_var=66.1414+/-13.857, 0's: 0 Z-trim(106.4): 8  B-trim: 47 in 1/48
 Lambda= 0.157702
 statistics sampled from 8956 (8960) to 8956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.275), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS2569.1 CAV3 gene_id:859|Hs108|chr3             ( 151) 1037 244.2 2.3e-65
CCDS55156.1 CAV1 gene_id:857|Hs108|chr7            ( 147)  703 168.2 1.7e-42
CCDS5767.1 CAV1 gene_id:857|Hs108|chr7             ( 178)  703 168.2   2e-42
CCDS5766.1 CAV2 gene_id:858|Hs108|chr7             ( 162)  327 82.7   1e-16


>>CCDS2569.1 CAV3 gene_id:859|Hs108|chr3                  (151 aa)
 initn: 1037 init1: 1037 opt: 1037  Z-score: 1286.9  bits: 244.2 E(32554): 2.3e-65
Smith-Waterman score: 1037; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI
               70        80        90       100       110       120

              130       140       150 
pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
       :::::::::::::::::::::::::::::::
CCDS25 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
              130       140       150 

>>CCDS55156.1 CAV1 gene_id:857|Hs108|chr7                 (147 aa)
 initn: 708 init1: 678 opt: 703  Z-score: 876.3  bits: 168.2 E(32554): 1.7e-42
Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:1-147)

               10        20        30        40        50        60
pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV
        ::.:   :  . : : : :::::::::::..:.:.::.::::::::: ::.::::.::.
CCDS55  MADE---LSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKA
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI
       :.:::::.::: :::::.:.:.:.::.::. :: .:: :::::::::::.::::::::..
CCDS55 SFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRV
         60        70        80        90       100       110      

              130       140       150 
pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
       ::. ..: :.::: :.:.. :.... :.::.
CCDS55 YSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
        120       130       140       

>>CCDS5767.1 CAV1 gene_id:857|Hs108|chr7                  (178 aa)
 initn: 708 init1: 678 opt: 703  Z-score: 875.3  bits: 168.2 E(32554): 2e-42
Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:32-178)

                                            10        20        30 
pF1KE3                              MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKN
                                     ::.:   :  . : : : :::::::::::.
CCDS57 SGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADE---LSEKQVYDAHTKEIDLVNRDPKH
              10        20        30           40        50        

              40        50        60        70        80        90 
pF1KE3 INEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFL
       .:.:.::.::::::::: ::.::::.::.:.:::::.::: :::::.:.:.:.::.::. 
CCDS57 LNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIY
       60        70        80        90       100       110        

             100       110       120       130       140       150 
pF1KE3 FACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
       :: .:: :::::::::::.::::::::..::. ..: :.::: :.:.. :.... :.::.
CCDS57 FAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI
      120       130       140       150       160       170        

>>CCDS5766.1 CAV2 gene_id:858|Hs108|chr7                  (162 aa)
 initn: 332 init1: 298 opt: 327  Z-score: 413.5  bits: 82.7 E(32554): 1e-16
Smith-Waterman score: 327; 39.2% identity (72.0% similar) in 125 aa overlap (26-150:39-162)

                    10        20        30        40        50     
pF1KE3      MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFD
                                     .:::. .:  . :. ::::::::: :.:::
CCDS57 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD
       10        20        30        40         50        60       

          60        70        80        90       100       110     
pF1KE3 GVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQ
        ::  :.. : .:::  :..:...:..:::.. :.::: .:  ::: ..: .:. :. . 
CCDS57 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP
        70        80        90       100       110       120       

         120       130       140       150 
pF1KE3 CISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV
        .. :..    ..  :: ...:.  ::... : .. 
CCDS57 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 
       130       140       150       160   




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:53:29 2016 done: Sat Nov  5 22:53:30 2016
 Total Scan time:  1.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]