FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3026, 146 aa
  1>>>pF1KE3026 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0202+/-0.000238; mu= 10.0926+/- 0.015
 mean_var=100.8415+/-20.807, 0's: 0 Z-trim(124.4): 3  B-trim: 1468 in 1/53
 Lambda= 0.127719
 statistics sampled from 46151 (46155) to 46151 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.541), width:  16
 Scan time:  6.190

The best scores are:                                      opt bits E(85289)
NP_001129419 (OMIM: 612693) ubiquitin-related modi ( 146) 1020 196.7 1.1e-50
NP_112176 (OMIM: 612693) ubiquitin-related modifie ( 101)  533 106.8 8.9e-24
NP_001252511 (OMIM: 612693) ubiquitin-related modi (  63)  424 86.6 6.9e-18


>>NP_001129419 (OMIM: 612693) ubiquitin-related modifier  (146 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1030.6  bits: 196.7 E(85289): 1.1e-50
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
               70        80        90       100       110       120

              130       140      
pF1KE3 TLRLLESPTPGEEGMGSWGHGSTPPS
       ::::::::::::::::::::::::::
NP_001 TLRLLESPTPGEEGMGSWGHGSTPPS
              130       140      

>>NP_112176 (OMIM: 612693) ubiquitin-related modifier 1   (101 aa)
 initn: 533 init1: 533 opt: 533  Z-score: 547.8  bits: 106.8 E(85289): 8.9e-24
Smith-Waterman score: 533; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
       :::::::::::::::::::                                         
NP_112 DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG                   
               70        80        90       100                    

>>NP_001252511 (OMIM: 612693) ubiquitin-related modifier  (63 aa)
 initn: 424 init1: 424 opt: 424  Z-score: 442.1  bits: 86.6 E(85289): 6.9e-18
Smith-Waterman score: 424; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
       :::                                                         
NP_001 DSV                                                         
                                                                   




146 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:42:17 2016 done: Sun Nov  6 15:42:18 2016
 Total Scan time:  6.190 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]