FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3026, 146 aa
  1>>>pF1KE3026 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5116+/-0.000537; mu= 7.2052+/- 0.033
 mean_var=101.7777+/-20.479, 0's: 0 Z-trim(116.7): 5  B-trim: 0 in 0/52
 Lambda= 0.127130
 statistics sampled from 17361 (17365) to 17361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.533), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS48035.1 URM1 gene_id:81605|Hs108|chr9          ( 146) 1020 195.9 7.3e-51
CCDS6900.1 URM1 gene_id:81605|Hs108|chr9           ( 101)  533 106.5 4.2e-24
CCDS59148.1 URM1 gene_id:81605|Hs108|chr9          (  63)  424 86.4 2.9e-18


>>CCDS48035.1 URM1 gene_id:81605|Hs108|chr9               (146 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 1026.6  bits: 195.9 E(32554): 7.3e-51
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
               70        80        90       100       110       120

              130       140      
pF1KE3 TLRLLESPTPGEEGMGSWGHGSTPPS
       ::::::::::::::::::::::::::
CCDS48 TLRLLESPTPGEEGMGSWGHGSTPPS
              130       140      

>>CCDS6900.1 URM1 gene_id:81605|Hs108|chr9                (101 aa)
 initn: 533 init1: 533 opt: 533  Z-score: 546.3  bits: 106.5 E(32554): 4.2e-24
Smith-Waterman score: 533; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
       :::::::::::::::::::                                         
CCDS69 DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG                   
               70        80        90       100                    

>>CCDS59148.1 URM1 gene_id:81605|Hs108|chr9               (63 aa)
 initn: 424 init1: 424 opt: 424  Z-score: 441.3  bits: 86.4 E(32554): 2.9e-18
Smith-Waterman score: 424; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE3 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
       :::                                                         
CCDS59 DSV                                                         
                                                                   




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:42:16 2016 done: Sun Nov  6 15:42:17 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]