FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3025, 142 aa
  1>>>pF1KE3025 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8309+/-0.000273; mu= 14.6061+/- 0.017
 mean_var=62.3416+/-12.537, 0's: 0 Z-trim(119.7): 15  B-trim: 143 in 2/49
 Lambda= 0.162437
 statistics sampled from 33917 (33935) to 33917 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.398), width:  16
 Scan time:  5.470

The best scores are:                                      opt bits E(85289)
NP_543140 (OMIM: 606855) relaxin-3 preproprotein [ ( 142)  991 239.7 1.2e-63
NP_001298126 (OMIM: 606855) relaxin-3 precursor [H ( 109)  435 109.3 1.7e-24
NP_005469 (OMIM: 606413) insulin-like peptide INSL ( 135)  175 48.4 4.3e-06


>>NP_543140 (OMIM: 606855) relaxin-3 preproprotein [Homo  (142 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1263.5  bits: 239.7 E(85289): 1.2e-63
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE3 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_543 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
               70        80        90       100       110       120

              130       140  
pF1KE3 LAGLSSSCCKWGCSKSEISSLC
       ::::::::::::::::::::::
NP_543 LAGLSSSCCKWGCSKSEISSLC
              130       140  

>>NP_001298126 (OMIM: 606855) relaxin-3 precursor [Homo   (109 aa)
 initn: 435 init1: 435 opt: 435  Z-score: 560.9  bits: 109.3 E(85289): 1.7e-24
Smith-Waterman score: 435; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE3 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
       :::                                                         
NP_001 EAMEKNIEAPRSKFTCSRLEKLDSCSVSPAPKCTRSSINKERYLPGCRC           
               70        80        90       100                    

>>NP_005469 (OMIM: 606413) insulin-like peptide INSL5 pr  (135 aa)
 initn: 188 init1: 124 opt: 175  Z-score: 230.3  bits: 48.4 E(85289): 4.3e-06
Smith-Waterman score: 175; 31.3% identity (59.5% similar) in 131 aa overlap (19-142:14-135)

               10        20        30        40        50        60
pF1KE3 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
                         :.  .:.:.   .::::: :.::.::. :..:::::     :
NP_005      MKGSIFTLFLFSVLFAISEVRSKE-SVRLCGLEYIRTVIYICASSRWRR-----H
                    10        20         30        40              

               70        80        90       100           110      
pF1KE3 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPS-WQG---TPGVLRG
       .   . .:.:.  : . . .: .    ::     . :..   :.   : :   :  . ..
NP_005 Q---EGIPQAQQAETGNSFQLPHKREFSEENPAQNLPKVDASGEDRLWGGQMPTEELWKS
      50           60        70        80        90       100      

         120         130       140  
pF1KE3 SR-DVLA--GLSSSCCKWGCSKSEISSLC
       .. .:..   :.. ::  ::: ...:.::
NP_005 KKHSVMSRQDLQTLCCTDGCSMTDLSALC
        110       120       130     




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:27:34 2016 done: Sun Nov  6 04:27:35 2016
 Total Scan time:  5.470 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]