FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3022, 136 aa
  1>>>pF1KE3022 136 - 136 aa - 136 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8997+/-0.00057; mu= 13.7481+/- 0.034
 mean_var=63.5281+/-12.633, 0's: 0 Z-trim(112.9): 5  B-trim: 0 in 0/50
 Lambda= 0.160913
 statistics sampled from 13577 (13578) to 13577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.417), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS6936.1 QRFP gene_id:347148|Hs108|chr9          ( 136)  955 229.2 6.1e-61


>>CCDS6936.1 QRFP gene_id:347148|Hs108|chr9               (136 aa)
 initn: 955 init1: 955 opt: 955  Z-score: 1207.5  bits: 229.2 E(32554): 6.1e-61
Smith-Waterman score: 955; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE3 MVRPYPLIYFLFLPLGACFPLLDRREPTDAMGGLGAGERWADLAMGPRPHSVWGSSRWLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MVRPYPLIYFLFLPLGACFPLLDRREPTDAMGGLGAGERWADLAMGPRPHSVWGSSRWLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ASQPQALLVIARGLQTSGREHAGCRFRFGRQDEGSEATGFLPAAGEKTSGPLGNLAEELN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ASQPQALLVIARGLQTSGREHAGCRFRFGRQDEGSEATGFLPAAGEKTSGPLGNLAEELN
               70        80        90       100       110       120

              130      
pF1KE3 GYSRKKGGFSFRFGRR
       ::::::::::::::::
CCDS69 GYSRKKGGFSFRFGRR
              130      




136 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:40:10 2016 done: Sun Nov  6 15:40:10 2016
 Total Scan time:  1.660 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]