FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3020, 125 aa
  1>>>pF1KE3020 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6589+/-0.000247; mu= 11.0994+/- 0.016
 mean_var=93.7157+/-18.768, 0's: 0 Z-trim(123.3): 2  B-trim: 0 in 0/56
 Lambda= 0.132485
 statistics sampled from 42746 (42750) to 42746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.501), width:  16
 Scan time:  5.550

The best scores are:                                      opt bits E(85289)
NP_683694 (OMIM: 607996) neuropeptide B preproprot ( 125)  847 170.3 7.2e-43
NP_001092926 (OMIM: 607997) neuropeptide W preprop ( 165)  173 41.6 0.00053


>>NP_683694 (OMIM: 607996) neuropeptide B preproprotein   (125 aa)
 initn: 847 init1: 847 opt: 847  Z-score: 890.6  bits: 170.3 E(85289): 7.2e-43
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE3 MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_683 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA
               70        80        90       100       110       120

            
pF1KE3 DCLAA
       :::::
NP_683 DCLAA
            

>>NP_001092926 (OMIM: 607997) neuropeptide W preproprote  (165 aa)
 initn: 170 init1: 170 opt: 173  Z-score: 192.8  bits: 41.6 E(85289): 0.00053
Smith-Waterman score: 173; 53.1% identity (64.1% similar) in 64 aa overlap (11-73:18-81)

                      10        20         30        40        50  
pF1KE3        MARSATLAAAALALCLLLAP-PGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPY
                        :: : ::: : :. :::: .:.   ..:::::::: :::::::
NP_001 MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPY
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE3 ARRSQPYRGAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKAN
         :     .: : .    :::                                       
NP_001 LWRRALRAAAGPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRA
               70        80        90       100       110       120




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:45:40 2016 done: Tue Nov  8 04:45:41 2016
 Total Scan time:  5.550 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]