FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3020, 125 aa
  1>>>pF1KE3020 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9750+/-0.000546; mu= 9.3110+/- 0.033
 mean_var=89.6420+/-17.826, 0's: 0 Z-trim(116.2): 5  B-trim: 0 in 0/51
 Lambda= 0.135462
 statistics sampled from 16779 (16783) to 16779 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.516), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS11790.1 NPB gene_id:256933|Hs108|chr17         ( 125)  847 173.8 2.5e-44


>>CCDS11790.1 NPB gene_id:256933|Hs108|chr17              (125 aa)
 initn: 847 init1: 847 opt: 847  Z-score: 909.5  bits: 173.8 E(32554): 2.5e-44
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE3 MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MARSATLAAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKANVFLSLRAA
               70        80        90       100       110       120

            
pF1KE3 DCLAA
       :::::
CCDS11 DCLAA
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:45:39 2016 done: Tue Nov  8 04:45:40 2016
 Total Scan time:  1.870 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]