FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3019, 124 aa
  1>>>pF1KE3019 124 - 124 aa - 124 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9833+/-0.000252; mu= 13.6981+/- 0.016
 mean_var=72.9204+/-14.131, 0's: 0 Z-trim(122.7): 6  B-trim: 20 in 1/54
 Lambda= 0.150193
 statistics sampled from 41142 (41149) to 41142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.482), width:  16
 Scan time:  5.580

The best scores are:                                      opt bits E(85289)
NP_003344 (OMIM: 600945) urocortin preproprotein [ ( 124)  810 183.1 9.8e-47
XP_016868582 (OMIM: 122560) PREDICTED: corticolibe ( 196)  164 43.3 0.00019
XP_016868581 (OMIM: 122560) PREDICTED: corticolibe ( 196)  164 43.3 0.00019
XP_016868579 (OMIM: 122560) PREDICTED: corticolibe ( 196)  164 43.3 0.00019
XP_016868580 (OMIM: 122560) PREDICTED: corticolibe ( 196)  164 43.3 0.00019
NP_000747 (OMIM: 122560) corticoliberin preproprot ( 196)  164 43.3 0.00019


>>NP_003344 (OMIM: 600945) urocortin preproprotein [Homo  (124 aa)
 initn: 810 init1: 810 opt: 810  Z-score: 960.1  bits: 183.1 E(85289): 9.8e-47
Smith-Waterman score: 810; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KE3 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFD
               70        80        90       100       110       120

           
pF1KE3 SVGK
       ::::
NP_003 SVGK
           

>>XP_016868582 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 195 init1: 141 opt: 164  Z-score: 200.9  bits: 43.3 E(85289): 0.00019
Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196)

        30        40        50        60        70        80       
pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS
                                     ::::  : :  :.     : :: :: ..: 
XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP
             110       120       130       140          150        

         90       100       110       120    
pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK
       .:.:::::::: .::.::...  ..:..:: ... .::
XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK
      160       170       180       190      

>>XP_016868581 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 195 init1: 141 opt: 164  Z-score: 200.9  bits: 43.3 E(85289): 0.00019
Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196)

        30        40        50        60        70        80       
pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS
                                     ::::  : :  :.     : :: :: ..: 
XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP
             110       120       130       140          150        

         90       100       110       120    
pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK
       .:.:::::::: .::.::...  ..:..:: ... .::
XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK
      160       170       180       190      

>>XP_016868579 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 195 init1: 141 opt: 164  Z-score: 200.9  bits: 43.3 E(85289): 0.00019
Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196)

        30        40        50        60        70        80       
pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS
                                     ::::  : :  :.     : :: :: ..: 
XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP
             110       120       130       140          150        

         90       100       110       120    
pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK
       .:.:::::::: .::.::...  ..:..:: ... .::
XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK
      160       170       180       190      

>>XP_016868580 (OMIM: 122560) PREDICTED: corticoliberin   (196 aa)
 initn: 195 init1: 141 opt: 164  Z-score: 200.9  bits: 43.3 E(85289): 0.00019
Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196)

        30        40        50        60        70        80       
pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS
                                     ::::  : :  :.     : :: :: ..: 
XP_016 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP
             110       120       130       140          150        

         90       100       110       120    
pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK
       .:.:::::::: .::.::...  ..:..:: ... .::
XP_016 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK
      160       170       180       190      

>>NP_000747 (OMIM: 122560) corticoliberin preproprotein   (196 aa)
 initn: 195 init1: 141 opt: 164  Z-score: 200.9  bits: 43.3 E(85289): 0.00019
Smith-Waterman score: 164; 45.6% identity (72.1% similar) in 68 aa overlap (58-124:132-196)

        30        40        50        60        70        80       
pF1KE3 PEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRR-DNPS
                                     ::::  : :  :.     : :: :: ..: 
NP_000 PSPEQATANFFRVLLQQLLLPRRSLDSPAALAERGARNALGGH---QEAPERERRSEEPP
             110       120       130       140          150        

         90       100       110       120    
pF1KE3 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK
       .:.:::::::: .::.::...  ..:..:: ... .::
NP_000 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK
      160       170       180       190      




124 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:36:10 2016 done: Sun Nov  6 18:36:11 2016
 Total Scan time:  5.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]