Result of FASTA (omim) for
pFN21AE3016
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3016, 114 aa
1>>>pF1KE3016 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4814+/-0.000281; mu= 10.1165+/- 0.018
mean_var=66.5762+/-12.930, 0's: 0 Z-trim(118.6): 15 B-trim: 0 in 0/58
Lambda= 0.157186
statistics sampled from 31636 (31651) to 31636 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.371), width: 16
Scan time: 4.380
The best scores are: opt bits E(85289)
NP_001035198 (OMIM: 158270) promotilin isoform 2 p ( 114) 724 171.9 1.9e-43
NP_002409 (OMIM: 158270) promotilin isoform 1 prep ( 115) 718 170.6 5e-43
NP_001171627 (OMIM: 158270) promotilin isoform 3 p ( 108) 665 158.5 2e-39
NP_001128417 (OMIM: 601665,605353) appetite-regula ( 104) 128 36.8 0.0087
XP_016862102 (OMIM: 601665,605353) PREDICTED: appe ( 116) 128 36.8 0.0096
NP_001128413 (OMIM: 601665,605353) appetite-regula ( 116) 128 36.8 0.0096
NP_001289752 (OMIM: 601665,605353) appetite-regula ( 116) 128 36.8 0.0096
>>NP_001035198 (OMIM: 158270) promotilin isoform 2 prepr (114 aa)
initn: 724 init1: 724 opt: 724 Z-score: 900.8 bits: 171.9 E(85289): 1.9e-43
Smith-Waterman score: 724; 99.1% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
70 80 90 100 110
>>NP_002409 (OMIM: 158270) promotilin isoform 1 prepropr (115 aa)
initn: 718 init1: 718 opt: 718 Z-score: 893.4 bits: 170.6 E(85289): 5e-43
Smith-Waterman score: 718; 99.1% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAAK
70 80 90 100 110
>>NP_001171627 (OMIM: 158270) promotilin isoform 3 prepr (108 aa)
initn: 678 init1: 665 opt: 665 Z-score: 828.9 bits: 158.5 E(85289): 2e-39
Smith-Waterman score: 665; 98.1% identity (100.0% similar) in 106 aa overlap (1-106:1-106)
10 20 30 40 50 60
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSRKAVAALLVVHVAAMLASQTEAFVPIFTYGELQRMQEKERNKGQKKSLSVWQRSGEE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
:::::::::::::::::::::::::::::::::::::::::::::.
NP_001 GPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLTAK
70 80 90 100
>>NP_001128417 (OMIM: 601665,605353) appetite-regulating (104 aa)
initn: 83 init1: 51 opt: 128 Z-score: 171.0 bits: 36.8 E(85289): 0.0087
Smith-Waterman score: 128; 30.2% identity (64.6% similar) in 96 aa overlap (23-114:12-98)
10 20 30 40 50
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKG----QKKSLSVWQR
: : :: :: .:.:.:: .: : ..:. : :
NP_001 MFTCWWSYLRSTLAAVP----GEASRVQRKESKKPPAKLQPRALAGWLR
10 20 30 40
60 70 80 90 100 110
pF1KE3 SGEEGPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
. : .. :: .: : ....::...:..... : ... .: .:...: ..::
NP_001 PEDGGQAEGAE----DELE-VRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEA
50 60 70 80 90 100
NP_001 PADK
>>XP_016862102 (OMIM: 601665,605353) PREDICTED: appetite (116 aa)
initn: 84 init1: 51 opt: 128 Z-score: 170.3 bits: 36.8 E(85289): 0.0096
Smith-Waterman score: 128; 29.2% identity (65.2% similar) in 89 aa overlap (30-114:27-110)
10 20 30 40 50
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKG----QKKSLSVWQR
: : ::.:.:: .: : ..:. : :
XP_016 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQRKESKKPPAKLQPRALAGWLR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 SGEEGPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
. : .. :: .: : ....::...:..... : ... .: .:...: ..::
XP_016 PEDGGQAEGAE----DELE-VRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEA
60 70 80 90 100 110
XP_016 PADK
>>NP_001128413 (OMIM: 601665,605353) appetite-regulating (116 aa)
initn: 84 init1: 51 opt: 128 Z-score: 170.3 bits: 36.8 E(85289): 0.0096
Smith-Waterman score: 128; 29.2% identity (65.2% similar) in 89 aa overlap (30-114:27-110)
10 20 30 40 50
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKG----QKKSLSVWQR
: : ::.:.:: .: : ..:. : :
NP_001 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQRKESKKPPAKLQPRALAGWLR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 SGEEGPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
. : .. :: .: : ....::...:..... : ... .: .:...: ..::
NP_001 PEDGGQAEGAE----DELE-VRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEA
60 70 80 90 100 110
NP_001 PADK
>>NP_001289752 (OMIM: 601665,605353) appetite-regulating (116 aa)
initn: 84 init1: 51 opt: 128 Z-score: 170.3 bits: 36.8 E(85289): 0.0096
Smith-Waterman score: 128; 29.2% identity (65.2% similar) in 89 aa overlap (30-114:27-110)
10 20 30 40 50
pF1KE3 MVSRKAVAALLVVHAAAMLASQTEAFVPIFTYGELQRMQEKERNKG----QKKSLSVWQR
: : ::.:.:: .: : ..:. : :
NP_001 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQRKESKKPPAKLQPRALAGWLR
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 SGEEGPVDPAEPIREEENEMIKLTAPLEIGMRMNSRQLEKYPATLEGLLSEMLPQHAK
. : .. :: .: : ....::...:..... : ... .: .:...: ..::
NP_001 PEDGGQAEGAE----DELE-VRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEA
60 70 80 90 100 110
NP_001 PADK
114 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:58:46 2016 done: Sun Nov 6 04:58:46 2016
Total Scan time: 4.380 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]