Result of FASTA (omim) for
pFN21AE3013
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3013, 103 aa
1>>>pF1KE3013 103 - 103 aa - 103 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2838+/-0.000298; mu= 9.6948+/- 0.019
mean_var=68.2504+/-13.373, 0's: 0 Z-trim(118.5): 34 B-trim: 48 in 1/51
Lambda= 0.155246
statistics sampled from 31484 (31518) to 31484 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.37), width: 16
Scan time: 4.150
The best scores are: opt bits E(85289)
NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR ( 103) 724 170.1 5.5e-43
NP_005663 (OMIM: 602470) prostate stem cell antige ( 114) 162 44.3 4.6e-05
NP_001120685 (OMIM: 601384) lymphocyte antigen 6E ( 131) 141 39.6 0.0014
NP_002337 (OMIM: 601384) lymphocyte antigen 6E pre ( 131) 141 39.6 0.0014
NP_803253 (OMIM: 606110) ly-6/neurotoxin-like prot ( 97) 139 39.1 0.0014
NP_001120699 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016
NP_001120698 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016
NP_976076 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016
NP_001120695 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016
NP_976074 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016
NP_001120697 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016
NP_976075 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016
NP_000602 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016
NP_003686 (OMIM: 606204) lymphocyte antigen 6D pre ( 128) 139 39.2 0.0018
NP_803430 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 132 37.6 0.005
NP_803429 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 132 37.6 0.005
NP_803252 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 132 37.6 0.005
>>NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR-rel (103 aa)
initn: 724 init1: 724 opt: 724 Z-score: 892.8 bits: 170.1 E(85289): 5.5e-43
Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE
10 20 30 40 50 60
70 80 90 100
pF1KE3 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
:::::::::::::::::::::::::::::::::::::::::::
NP_065 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
70 80 90 100
>>NP_005663 (OMIM: 602470) prostate stem cell antigen pr (114 aa)
initn: 143 init1: 83 opt: 162 Z-score: 211.8 bits: 44.3 E(85289): 4.6e-05
Smith-Waterman score: 162; 27.8% identity (53.3% similar) in 90 aa overlap (12-101:1-85)
10 20 30 40 50 60
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE
.:. .. : :: ::.:: ... .: . : : :. . .
NP_005 MAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRA---
10 20 30 40
70 80 90 100
pF1KE3 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
. :....:: .:: . : . . : :: ::::.
NP_005 --VGLLTVISKGCSLNCVDDSQDYYVGKKNITCCDTDLCNASGAHALQPAAAILALLPAL
50 60 70 80 90 100
NP_005 GLLLWGPGQL
110
>>NP_001120685 (OMIM: 601384) lymphocyte antigen 6E prec (131 aa)
initn: 60 init1: 43 opt: 141 Z-score: 185.5 bits: 39.6 E(85289): 0.0014
Smith-Waterman score: 141; 26.3% identity (58.9% similar) in 95 aa overlap (9-100:7-99)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVT--VE
.::.: .. . .: :..: . .. : : :. .:. :.:. .. .
NP_001 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIG
10 20 30 40 50
60 70 80 90 100
pF1KE3 AEYPFNQSPVVTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCNSEL
:..: ....:: .: . ..:.: . : :: :::
NP_001 NLVTFGHS--LSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGA
60 70 80 90 100 110
NP_001 GLLLSLLPALLRFGP
120 130
>>NP_002337 (OMIM: 601384) lymphocyte antigen 6E precurs (131 aa)
initn: 60 init1: 43 opt: 141 Z-score: 185.5 bits: 39.6 E(85289): 0.0014
Smith-Waterman score: 141; 26.3% identity (58.9% similar) in 95 aa overlap (9-100:7-99)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVT--VE
.::.: .. . .: :..: . .. : : :. .:. :.:. .. .
NP_002 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIG
10 20 30 40 50
60 70 80 90 100
pF1KE3 AEYPFNQSPVVTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCNSEL
:..: ....:: .: . ..:.: . : :: :::
NP_002 NLVTFGHS--LSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGA
60 70 80 90 100 110
NP_002 GLLLSLLPALLRFGP
120 130
>>NP_803253 (OMIM: 606110) ly-6/neurotoxin-like protein (97 aa)
initn: 123 init1: 58 opt: 139 Z-score: 185.0 bits: 39.1 E(85289): 0.0014
Smith-Waterman score: 139; 30.2% identity (56.2% similar) in 96 aa overlap (9-102:7-97)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSM--GCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVE
:::.:. :. . .::. :. : ..: .:: ..: :.:: . :
NP_803 MQLGTGLLLAAVLSLQLAAAEAIWCHQC---TGFGGCSHGSRCLRDSTHCVTTATRVL
10 20 30 40 50
60 70 80 90 100
pF1KE3 AEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
.. .. :.::. : .: ..: : :: .::: .
NP_803 SNT--EDLPLVTKMCHIGCPDIPSLGLGPYVSIACCQTSLCNHD
60 70 80 90
>>NP_001120699 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
:::: : :..:.::.: .: .:.:.: . :. . ::. : . .
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
10 20 30 40 50
60 70 80 90 100
pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL
.. .:. . :. . :.: . .: . :: .::::
NP_001 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
60 70 80 90 100 110
NP_001 VLLLVTPFLAAAWSLHP
120
>>NP_001120698 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
:::: : :..:.::.: .: .:.:.: . :. . ::. : . .
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
10 20 30 40 50
60 70 80 90 100
pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL
.. .:. . :. . :.: . .: . :: .::::
NP_001 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
60 70 80 90 100 110
NP_001 VLLLVTPFLAAAWSLHP
120
>>NP_976076 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa)
initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
:::: : :..:.::.: .: .:.:.: . :. . ::. : . .
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
10 20 30 40 50
60 70 80 90 100
pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL
.. .:. . :. . :.: . .: . :: .::::
NP_976 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
60 70 80 90 100 110
NP_976 VLLLVTPFLAAAWSLHP
120
>>NP_001120695 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa)
initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
:::: : :..:.::.: .: .:.:.: . :. . ::. : . .
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
10 20 30 40 50
60 70 80 90 100
pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL
.. .:. . :. . :.: . .: . :: .::::
NP_001 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
60 70 80 90 100 110
NP_001 VLLLVTPFLAAAWSLHP
120
>>NP_976074 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa)
initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95)
10 20 30 40 50
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
:::: : :..:.::.: .: .:.:.: . :. . ::. : . .
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
10 20 30 40 50
60 70 80 90 100
pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL
.. .:. . :. . :.: . .: . :: .::::
NP_976 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
60 70 80 90 100 110
NP_976 VLLLVTPFLAAAWSLHP
120
103 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:29:30 2016 done: Sun Nov 6 04:29:31 2016
Total Scan time: 4.150 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]