FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3013, 103 aa
  1>>>pF1KE3013 103 - 103 aa - 103 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8226+/-0.000672; mu= 12.5844+/- 0.041
 mean_var=71.1282+/-13.833, 0's: 0 Z-trim(111.6): 30  B-trim: 44 in 1/49
 Lambda= 0.152073
 statistics sampled from 12472 (12498) to 12472 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS6387.1 SLURP1 gene_id:57152|Hs108|chr8         ( 103)  724 166.8 2.2e-42
CCDS6388.1 LYPD2 gene_id:137797|Hs108|chr8         ( 125)  277 68.8 8.3e-13


>>CCDS6387.1 SLURP1 gene_id:57152|Hs108|chr8              (103 aa)
 initn: 724 init1: 724 opt: 724  Z-score: 874.5  bits: 166.8 E(32554): 2.2e-42
Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE
               10        20        30        40        50        60

               70        80        90       100   
pF1KE3 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
       :::::::::::::::::::::::::::::::::::::::::::
CCDS63 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
               70        80        90       100   

>>CCDS6388.1 LYPD2 gene_id:137797|Hs108|chr8              (125 aa)
 initn: 261 init1: 261 opt: 277  Z-score: 343.4  bits: 68.8 E(32554): 8.3e-13
Smith-Waterman score: 277; 42.6% identity (65.3% similar) in 101 aa overlap (3-100:4-100)

                10        20           30        40        50      
pF1KE3  MASRWAVQLLLVAAWSMGCGE---ALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVT
          .: :.  :..::    :::   ::.::.: ::   ..: ::. :  ..: : ::: .
CCDS63 MRGTRLALLALVLAA----CGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYS
               10            20        30        40        50      

         60        70        80        90       100                
pF1KE3 VEAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL             
        :  :::. . .::.::.:.:  .: :.:: .  . ::  .:::                
CCDS63 REIVYPFQGDSTVTKSCASKCKPSDVDGIGQTLPVSCCNTELCNVDGAPALNSLHCGALT
         60        70        80        90       100       110      

CCDS63 LLPLLSLRL
        120     




103 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:29:29 2016 done: Sun Nov  6 04:29:29 2016
 Total Scan time:  1.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]