FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3010, 97 aa
  1>>>pF1KE3010 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3528+/-0.000473; mu= 14.8272+/- 0.029
 mean_var=56.6238+/-11.145, 0's: 0 Z-trim(115.6): 5  B-trim: 125 in 1/51
 Lambda= 0.170441
 statistics sampled from 16142 (16147) to 16142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.496), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS32662.1 PYY gene_id:5697|Hs108|chr17           (  97)  651 166.6 2.2e-42
CCDS5387.1 NPY gene_id:4852|Hs108|chr7             (  97)  332 88.1   9e-19


>>CCDS32662.1 PYY gene_id:5697|Hs108|chr17                (97 aa)
 initn: 651 init1: 651 opt: 651  Z-score: 874.4  bits: 166.6 E(32554): 2.2e-42
Smith-Waterman score: 651; 97.9% identity (97.9% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE3 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS32 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPREDASPEELNRYYASLRHYLNLVT
               10        20        30        40        50        60

               70        80        90       
pF1KE3 RQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       ::::::::::: :::::::::::::::::::::::::
CCDS32 RQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
               70        80        90       

>>CCDS5387.1 NPY gene_id:4852|Hs108|chr7                  (97 aa)
 initn: 314 init1: 286 opt: 332  Z-score: 450.5  bits: 88.1 E(32554): 9e-19
Smith-Waterman score: 332; 54.1% identity (80.0% similar) in 85 aa overlap (13-97:13-97)

               10        20        30        40        50        60
pF1KE3 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLNLVT
                   :. :.::::::::..::: ::. :::::  :.. :::..::::.::.:
CCDS53 MLGNKRLGLSGLTLALSLLVCLGALAEAYPSKPDNPGEDAPAEDMARYYSALRHYINLIT
               10        20        30        40        50        60

               70        80        90       
pF1KE3 RQRYGKRDGPDRLLSKTFFPDGEDRPVRSRSEGPDLW
       :::::::..:. :.:  .. .. .   :.: : : .:
CCDS53 RQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
               70        80        90       




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:14:32 2016 done: Sun Nov  6 12:14:33 2016
 Total Scan time:  1.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]