FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3006, 85 aa
  1>>>pF1KE3006 85 - 85 aa - 85 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2447+/-0.000622; mu= 7.5380+/- 0.037
 mean_var=48.6620+/- 9.460, 0's: 0 Z-trim(109.2): 11  B-trim: 0 in 0/49
 Lambda= 0.183857
 statistics sampled from 10723 (10726) to 10723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(32554)
CCDS9366.1 UFM1 gene_id:51569|Hs108|chr13          (  85)  543 151.1 7.7e-38
CCDS66533.1 UFM1 gene_id:51569|Hs108|chr13         ( 103)  417 117.7 1.1e-27


>>CCDS9366.1 UFM1 gene_id:51569|Hs108|chr13               (85 aa)
 initn: 543 init1: 543 opt: 543  Z-score: 792.9  bits: 151.1 E(32554): 7.7e-38
Smith-Waterman score: 543; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA
               10        20        30        40        50        60

               70        80     
pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC
       :::::::::::::::::::::::::
CCDS93 QTAGNVFLKHGSELRIIPRDRVGSC
               70        80     

>>CCDS66533.1 UFM1 gene_id:51569|Hs108|chr13              (103 aa)
 initn: 417 init1: 417 opt: 417  Z-score: 610.8  bits: 117.7 E(32554): 1.1e-27
Smith-Waterman score: 417; 100.0% identity (100.0% similar) in 65 aa overlap (21-85:39-103)

                         10        20        30        40        50
pF1KE3           MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAII
                                     ::::::::::::::::::::::::::::::
CCDS66 TPRSLHLFTSSTFLARALPGAFPTGACEERLSVPESTPFTAVLKFAAEEFKVPAATSAII
       10        20        30        40        50        60        

               60        70        80     
pF1KE3 TNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGSC
       :::::::::::::::::::::::::::::::::::
CCDS66 TNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGSC
       70        80        90       100   




85 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:36:49 2016 done: Sun Nov  6 14:36:50 2016
 Total Scan time:  1.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]