FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3001, 68 aa
  1>>>pF1KE3001 68 - 68 aa - 68 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6169+/-0.000258; mu= 9.8703+/- 0.016
 mean_var=49.2496+/- 9.783, 0's: 0 Z-trim(120.7): 6  B-trim: 2188 in 2/53
 Lambda= 0.182757
 statistics sampled from 36177 (36183) to 36177 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.424), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(85289)
NP_005209 (OMIM: 602056) beta-defensin 1 prepropro (  68)  482 133.6 2.4e-32
NP_004933 (OMIM: 602215) beta-defensin 4A precurso (  64)  123 38.9 0.00071
NP_061131 (OMIM: 606611) beta-defensin 103 precurs (  67)  115 36.8  0.0032


>>NP_005209 (OMIM: 602056) beta-defensin 1 preproprotein  (68 aa)
 initn: 482 init1: 482 opt: 482  Z-score: 701.7  bits: 133.6 E(85289): 2.4e-32
Smith-Waterman score: 482; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KE3 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY
               10        20        30        40        50        60

               
pF1KE3 RGKAKCCK
       ::::::::
NP_005 RGKAKCCK
               

>>NP_004933 (OMIM: 602215) beta-defensin 4A precursor [H  (64 aa)
 initn: 121 init1:  99 opt: 123  Z-score: 190.5  bits: 38.9 E(85289): 0.00071
Smith-Waterman score: 123; 39.7% identity (54.4% similar) in 68 aa overlap (1-68:1-62)

               10        20        30        40        50        60
pF1KE3 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY
       ::. :::.  : ..:  :   : :  :.:   :  .:..::. :    ::   :  ::: 
NP_004 MRVLYLLFSFLFIFL--MPLPGVF-GGIG---DPVTCLKSGAICHPVFCPRRYKQIGTCG
               10          20            30        40        50    

                 
pF1KE3 RGKAKCCK  
          .::::  
NP_004 LPGTKCCKKP
           60    

>>NP_061131 (OMIM: 606611) beta-defensin 103 precursor [  (67 aa)
 initn: 122 init1:  66 opt: 115  Z-score: 178.8  bits: 36.8 E(85289): 0.0032
Smith-Waterman score: 115; 35.7% identity (57.1% similar) in 70 aa overlap (1-68:1-64)

               10        20        30        40         50         
pF1KE3 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSAC-PIFTKIQGTC
       ::  :::.  : :.:  . . :.... :    ..: :   ::.:   .: :   .: : :
NP_061 MRIHYLLFALLFLFLVPVPGHGGIINTL----QKYYCRVRGGRCAVLSCLPKEEQI-GKC
               10        20            30        40        50      

      60            
pF1KE3 Y-RGKAKCCK   
         ::. :::.   
NP_061 STRGR-KCCRRKK
          60        




68 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:31:15 2016 done: Sun Nov  6 04:31:15 2016
 Total Scan time:  3.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]