FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2792, 210 aa
  1>>>pF1KE2792     210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4754+/-0.000721; mu= 8.8550+/- 0.043
 mean_var=98.0490+/-19.915, 0's: 0 Z-trim(111.7): 14  B-trim: 0 in 0/54
 Lambda= 0.129525
 statistics sampled from 12737 (12742) to 12737 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.381), width:  16
 Scan time:  1.080

The best scores are:                                      opt bits E(33420)
CCDS2842.1 ABHD14B gene_id:84836|Hs109|chr3        ( 210) 1409 272.8 1.1e-73
CCDS2843.1 ABHD14A gene_id:25864|Hs109|chr3        ( 271)  557 113.7 1.2e-25


>>CCDS2842.1 ABHD14B gene_id:84836|Hs109|chr3             (210 aa)
 initn: 1409 init1: 1409 opt: 1409  Z-score: 1436.6  bits: 272.8 E(33420): 1.1e-73
Smith-Waterman score: 1409; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KE2 MAASVEQREGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MAASVEQREGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GYRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GYRAVAIDLPGLGHSKEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LTAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQDPMGQTSFEHLKQLPNHRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LTAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQDPMGQTSFEHLKQLPNHRV
              130       140       150       160       170       180

              190       200       210
pF1KE2 LIMKGAGHPCYLDKPEEWHTGLLDFLQGLQ
       ::::::::::::::::::::::::::::::
CCDS28 LIMKGAGHPCYLDKPEEWHTGLLDFLQGLQ
              190       200       210

>>CCDS2843.1 ABHD14A gene_id:25864|Hs109|chr3             (271 aa)
 initn: 523 init1: 208 opt: 557  Z-score: 574.5  bits: 113.7 E(33420): 1.2e-25
Smith-Waterman score: 557; 47.7% identity (73.3% similar) in 195 aa overlap (19-209:81-270)

                           10        20        30        40        
pF1KE2             MAASVEQREGTIQVQGQALFFREALPGSGQARFSVLLLHGIRFSSETW
                                     .:.::.:: .   :  :.::::  :.:.::
CCDS28 GLPGPPEQTSCLWGDPNVTVLAGLTPGNSPIFYREVLPLNQAHRVEVVLLHGKAFNSHTW
               60        70        80        90       100       110

       50        60        70           80        90       100     
pF1KE2 QNLGTLHRLAQAGYRAVAIDLPGLGHS---KEAAAPAPIGELAPGSFLAAVVDALELGPP
       ..::::. :.: ::::::.::::.:.:   :::.. :  :. :   .:  ..  ::.   
CCDS28 EQLGTLQLLSQRGYRAVALDLPGFGNSAPSKEASTEA--GRAA---LLERALRDLEVQNA
              120       130       140         150          160     

         110       120       130       140       150       160     
pF1KE2 VVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYASVKTPALIVYGDQDP-M
       :..:::::: :.::::     :: ::::.::  :.. .  .. .::::.::.::. :  .
CCDS28 VLVSPSLSGHYALPFLMRGHHQLHGFVPIAPTSTQNYTQEQFWAVKTPTLILYGELDHIL
         170       180       190       200       210       220     

          170       180       190       200       210
pF1KE2 GQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTGLLDFLQGLQ
       .. :...:..:::: :. ...::: ::: ::...:  :: ::. : 
CCDS28 ARESLRQLRHLPNHSVVKLRNAGHACYLHKPQDFHLVLLAFLDHLP
         230       240       250       260       270 




210 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 19 20:45:35 2021 done: Fri Feb 19 20:45:35 2021
 Total Scan time:  1.080 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]