FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2789, 227 aa
  1>>>pF1KE2789     227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.8982+/-0.00107; mu= -21.6809+/- 0.065
 mean_var=524.2203+/-106.197, 0's: 0 Z-trim(117.4): 8  B-trim: 263 in 1/51
 Lambda= 0.056017
 statistics sampled from 18331 (18338) to 18331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.549), width:  16
 Scan time:  1.230

The best scores are:                                      opt bits E(33420)
CCDS3888.1 BASP1 gene_id:10409|Hs109|chr5          ( 227) 1441 129.5 1.8e-30


>>CCDS3888.1 BASP1 gene_id:10409|Hs109|chr5               (227 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 660.6  bits: 129.5 E(33420): 1.8e-30
Smith-Waterman score: 1441; 99.6% identity (99.6% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE2 MGGKLSKKKKGYNVNDEKAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MGGKLSKKKKGYNVNDEKAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 DAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KAAEAAAAPAESAAPAAGEEPSKEEGEPKKTGAPAAPAAQETKSDGAPASDSKPGSSEAA
       ::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS38 KAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAA
              130       140       150       160       170       180

              190       200       210       220       
pF1KE2 PSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAPAANSDQTVTVKE
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAPAANSDQTVTVKE
              190       200       210       220       




227 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 19 20:41:45 2021 done: Fri Feb 19 20:41:45 2021
 Total Scan time:  1.230 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]