Result of FASTA (ccds) for
pFN21AE2768
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2768, 224 aa
1>>>pF1KE2768 224 - 224 aa - 224 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0131+/-0.00093; mu= 11.8593+/- 0.055
mean_var=119.0601+/-24.903, 0's: 0 Z-trim(109.3): 121 B-trim: 415 in 1/52
Lambda= 0.117541
statistics sampled from 10772 (10911) to 10772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.326), width: 16
Scan time: 1.040
The best scores are: opt bits E(33420)
CCDS7947.2 TRIM48 gene_id:79097|Hs109|chr11 ( 224) 1573 277.3 5.7e-75
CCDS60930.1 TRIM49D1 gene_id:399939|Hs109|chr11 ( 452) 1157 207.0 1.6e-53
CCDS53694.1 TRIM49C gene_id:642612|Hs109|chr11 ( 452) 1041 187.4 1.3e-47
CCDS8287.1 TRIM49 gene_id:57093|Hs109|chr11 ( 452) 1041 187.4 1.3e-47
CCDS55762.1 TRIM49B gene_id:283116|Hs109|chr11 ( 452) 1027 185.0 7e-47
CCDS2015.1 TRIM43 gene_id:129868|Hs109|chr2 ( 446) 729 134.4 1.1e-31
CCDS53693.1 TRIM64B gene_id:642446|Hs109|chr11 ( 449) 568 107.1 1.9e-23
CCDS73363.1 TRIM64 gene_id:120146|Hs109|chr11 ( 449) 561 106.0 4.3e-23
CCDS73287.1 TRIM64C gene_id:646754|Hs109|chr11 ( 450) 530 100.7 1.6e-21
CCDS60929.1 TRIM77 gene_id:390231|Hs109|chr11 ( 450) 487 93.4 2.6e-19
CCDS5678.1 TRIM4 gene_id:89122|Hs109|chr7 ( 474) 397 78.2 1e-14
CCDS34378.1 TRIM39 gene_id:56658|Hs109|chr6 ( 488) 358 71.6 1e-12
CCDS78121.1 RPP21 gene_id:202658|Hs109|chr6 ( 503) 358 71.6 1.1e-12
CCDS34377.1 TRIM39 gene_id:56658|Hs109|chr6 ( 518) 358 71.6 1.1e-12
CCDS31048.1 TRIM11 gene_id:81559|Hs109|chr1 ( 468) 355 71.0 1.4e-12
CCDS31356.1 TRIM68 gene_id:55128|Hs109|chr11 ( 485) 350 70.2 2.7e-12
CCDS4654.1 TRIM27 gene_id:5987|Hs109|chr6 ( 513) 348 69.9 3.5e-12
CCDS3808.1 TRIM60 gene_id:166655|Hs109|chr4 ( 471) 346 69.5 4.2e-12
CCDS44327.1 TRIM17 gene_id:51127|Hs109|chr1 ( 343) 344 69.0 4.2e-12
CCDS1571.1 TRIM17 gene_id:51127|Hs109|chr1 ( 477) 344 69.2 5.3e-12
CCDS44525.1 TRIM21 gene_id:6737|Hs109|chr11 ( 475) 342 68.8 6.7e-12
CCDS5679.1 TRIM4 gene_id:89122|Hs109|chr7 ( 500) 341 68.7 7.8e-12
CCDS31389.1 TRIM6 gene_id:117854|Hs109|chr11 ( 516) 332 67.2 2.3e-11
CCDS31390.1 TRIM6 gene_id:117854|Hs109|chr11 ( 488) 331 67.0 2.5e-11
CCDS31388.1 TRIM34 gene_id:445372|Hs109|chr11 ( 842) 332 67.4 3.3e-11
CCDS31392.1 TRIM5 gene_id:85363|Hs109|chr11 ( 326) 322 65.3 5.4e-11
CCDS31394.1 TRIM5 gene_id:85363|Hs109|chr11 ( 347) 322 65.3 5.6e-11
CCDS31393.1 TRIM5 gene_id:85363|Hs109|chr11 ( 493) 322 65.5 7.2e-11
CCDS34093.1 TRIM61 gene_id:391712|Hs109|chr4 ( 209) 316 64.1 8e-11
>>CCDS7947.2 TRIM48 gene_id:79097|Hs109|chr11 (224 aa)
initn: 1573 init1: 1573 opt: 1573 Z-score: 1459.6 bits: 277.3 E(33420): 5.7e-75
Smith-Waterman score: 1573; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
130 140 150 160 170 180
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
190 200 210 220
>>CCDS60930.1 TRIM49D1 gene_id:399939|Hs109|chr11 (452 aa)
initn: 1198 init1: 1156 opt: 1157 Z-score: 1074.5 bits: 207.0 E(33420): 1.6e-53
Smith-Waterman score: 1157; 89.5% identity (94.5% similar) in 181 aa overlap (17-197:1-179)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
::::::::::::::::::.:::::::::::::::::::::::::
CCDS60 MNSGISQVFQRELTCPICLNYFIDPVTIDCGHSFCRPCFYLNWQ
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
:::::::::::.:: :::::::::::::::: :::::::::::::::::: ::::::.::
CCDS60 DIPILTQCFECLKTTQQRNLKTNIRLKKMASRARKASLWLFLSSEEQMCGTHRETKKIFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:::::::::::::: ::::::::::::::::: :::::::::::::.:::::::::::::
CCDS60 EVDRSLLCLLCSSSLEHRYHRHCPAEWAAEEHREKLLKKMQSLWEKVCENQRNLNVETTR
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
::::: . .. : :..
CCDS60 ISHWKDYVNV--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAKMAHR
170 180 190 200 210 220
>>CCDS53694.1 TRIM49C gene_id:642612|Hs109|chr11 (452 aa)
initn: 1063 init1: 1040 opt: 1041 Z-score: 968.2 bits: 187.4 E(33420): 1.3e-47
Smith-Waterman score: 1041; 81.2% identity (89.5% similar) in 181 aa overlap (17-197:1-179)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
::::: :::: :: ::.:::::::::::::::::::::::::::
CCDS53 MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
:::.:.:: :: :. .: ::::::.::::::::::.:::::::::::::: ::::::.::
CCDS53 DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:::::::::::::::::::::: : ::::::: ::::.::::::::::::.:::::::::
CCDS53 EVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTR
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
:: . .. : :..
CCDS53 TRCWKDYVNL--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHR
170 180 190 200 210 220
>>CCDS8287.1 TRIM49 gene_id:57093|Hs109|chr11 (452 aa)
initn: 1063 init1: 1040 opt: 1041 Z-score: 968.2 bits: 187.4 E(33420): 1.3e-47
Smith-Waterman score: 1041; 81.2% identity (89.5% similar) in 181 aa overlap (17-197:1-179)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
::::: :::: :: ::.:::::::::::::::::::::::::::
CCDS82 MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
:::.:.:: :: :. .: ::::::.::::::::::.:::::::::::::: ::::::.::
CCDS82 DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKIFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:::::::::::::::::::::: : ::::::: ::::.::::::::::::.:::::::::
CCDS82 EVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNVETTR
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
:: . .. : :..
CCDS82 TRCWKDYVNL--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHR
170 180 190 200 210 220
>>CCDS55762.1 TRIM49B gene_id:283116|Hs109|chr11 (452 aa)
initn: 1049 init1: 1026 opt: 1027 Z-score: 955.4 bits: 185.0 E(33420): 7e-47
Smith-Waterman score: 1027; 80.7% identity (88.4% similar) in 181 aa overlap (17-197:1-179)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
::::: ::::::: :::::::::::::::::::::::::::::.
CCDS55 MNSGILQVFQRELICPICMNYFIDPVTIDCGHSFCRPCFYLNWK
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
: :.:.:: :: :. : ::::::..:::::::::.:::::::::::::: :::::::::
CCDS55 DSPFLVQCSECTKSTGQINLKTNIHFKKMASLARKVSLWLFLSSEEQMCGTHRETKKMFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:::::::::::::::::: ::::: : ::::: ::::.::::::::::::.:::::::::
CCDS55 EVDRSLLCLLCSSSQEHRDHRHCPIESAAEEHQEKLLQKMQSLWEKACENHRNLNVETTR
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
:: . .. : :..
CCDS55 TRCWKDYVNL--RLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAKMAHR
170 180 190 200 210 220
>>CCDS2015.1 TRIM43 gene_id:129868|Hs109|chr2 (446 aa)
initn: 872 init1: 709 opt: 729 Z-score: 682.3 bits: 134.4 E(33420): 1.1e-31
Smith-Waterman score: 729; 55.8% identity (78.5% similar) in 181 aa overlap (17-197:1-179)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
:.: .:..::.:::: ::.::..::::: :::::::::. :.:.
CCDS20 MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWE
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
. ..: : . . ..:::: ::.....::::::: :::::.:.:: ::.::::::
CCDS20 EAQSPANCPACREPSPKMDFKTNILLKNLVTIARKASLWQFLSSEKQICGTHRQTKKMFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
..:.::::::::.:::: :.: : : ::::: :::::.:. ::.: :::::: :
CCDS20 DMDKSLLCLLCSNSQEHGAHKHHPIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRT
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
:. :... :.. .
CCDS20 AFLWR--GNVVLRAQMIRNEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVKMDQK
170 180 190 200 210 220
>>CCDS53693.1 TRIM64B gene_id:642446|Hs109|chr11 (449 aa)
initn: 587 init1: 299 opt: 568 Z-score: 534.8 bits: 107.1 E(33420): 1.9e-23
Smith-Waterman score: 568; 47.6% identity (68.4% similar) in 187 aa overlap (17-202:1-186)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
:.: :::: :: : ::.:::::::::::::::::::. : .
CCDS53 MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSE
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
. .: : :: .. :..::. :::..::::.. ..: ...: .:.:::..::
CCDS53 EGRAPMRCPSCRKTSEKPNFNTNLVLKKLSSLARQTRPQN-INSSDNICVLHEETKELFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:.:. ::: :: : :: : : : ::::: :::.:.:. ::: :.. ::: ::.
CCDS53 EADKRLLCGPCSESPEHMAHSHSPIGWAAEECREKLIKEMDYLWEINQETRNNLNQETST
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLH-MPQPLNLALRAGPITGLRDRLNQF
. : . .. : .. . ::
CCDS53 FHSLKDYVSVRKRIITIQYQKMPIFLDEEEQRHLQALEREAEELFQQLQDSQVRMTQHLE
170 180 190 200 210 220
>>CCDS73363.1 TRIM64 gene_id:120146|Hs109|chr11 (449 aa)
initn: 613 init1: 295 opt: 561 Z-score: 528.3 bits: 106.0 E(33420): 4.3e-23
Smith-Waterman score: 561; 47.1% identity (67.4% similar) in 187 aa overlap (17-202:1-186)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
:.: :::: :: : ::.:::::::::::::::::::. : .
CCDS73 MDSDDLQVFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSE
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
. .: : : .. :..::. :::..::::.. ..: ...: .:.:::..::
CCDS73 EGRAPMRCPSCRKISEKPNFNTNVVLKKLSSLARQTRPQN-INSSDNICVLHEETKELFC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:.:. ::: :: : :: : : : ::::: :::.:.:. ::: :.. ::: ::
CCDS73 EADKRLLCGPCSESPEHMAHSHSPIGWAAEECREKLIKEMDYLWEINQETRNNLNQETRT
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLH-MPQPLNLALRAGPITGLRDRLNQF
. : . .. : .. . ::
CCDS73 FHSLKDYVSVRKRIITIQYQKMPIFLDEEEQRHLQALEREAEELFQQLQDSQVRMTQHLE
170 180 190 200 210 220
>>CCDS73287.1 TRIM64C gene_id:646754|Hs109|chr11 (450 aa)
initn: 558 init1: 317 opt: 530 Z-score: 499.9 bits: 100.7 E(33420): 1.6e-21
Smith-Waterman score: 530; 49.1% identity (70.3% similar) in 165 aa overlap (17-180:1-164)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
:.: .::: :: : ::.:::::::: :: :::::::. : .
CCDS73 MDSDTLRVFQNELICCICVNYFIDPVTTDCVHSFCRPCLCLCSE
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
. .: : : .. :..::. :::.:::::.. ..: ...: .:.:::..::
CCDS73 EGRAPMRCPLCRKISEKPNFNTNVALKKLASLARQTRPQN-INSSDNICVLHEETKELFC
50 60 70 80 90 100
130 140 150 160 170
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEE-HWEKLLKKMQSLWEKACENQRNLNVETT
:.:. ::: :: : :: : : : ::::: . .::.:.:. ::. :.: ::: ::.
CCDS73 EADKRLLCGPCSESPEHMAHSHSPIGWAAEECRVQKLIKEMDYLWKINQETQNNLNQETS
110 120 130 140 150 160
180 190 200 210 220
pF1KE2 RISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
.
CCDS73 KFCSLVDYVSLRKVIITIQYQKMHIFLDEEEQRHLQALEREAKELFQQLQDSQVRMTQHL
170 180 190 200 210 220
>>CCDS60929.1 TRIM77 gene_id:390231|Hs109|chr11 (450 aa)
initn: 567 init1: 463 opt: 487 Z-score: 460.5 bits: 93.4 E(33420): 2.6e-19
Smith-Waterman score: 487; 42.2% identity (65.2% similar) in 187 aa overlap (17-203:1-185)
10 20 30 40 50 60
pF1KE2 MSRRIIVGTLQRTQRNMNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
: :.:.: :::: :: .:. ::::: ::: :: ::. : :.
CCDS60 MASAITQCSTSELTCSICTDYLTDPVTICCGHRFCSPCLCLLWE
10 20 30 40
70 80 90 100 110 120
pF1KE2 DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKMFC
: . : : . :: .: : .:.. .:.. . :: .: :.: :...:
CCDS60 DTLTPNCCPVCREISQQMYFKRIIFAEKQVIPTRESVPCQLSSSAMLICRRHQEIKNLIC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 EVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNVETTR
:.::::::.:::.: .: :.: .. : : . .::: .:.:.:.: .:::::: ::.
CCDS60 ETDRSLLCFLCSQSPRHATHKHYMTREADEYYRKKLLIQMKSIWKKKQKNQRNLNRETNI
110 120 130 140 150 160
190 200 210 220
pF1KE2 ISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF
:. :..: : :: . ..:.
CCDS60 IGTWEVF--INLRSMMISAEYPKVCQYLREEEQKHVESLAREGRIIFQQLKRSQTRMAKM
170 180 190 200 210 220
224 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jul 3 20:42:17 2020 done: Fri Jul 3 20:42:17 2020
Total Scan time: 1.040 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]